Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67500 317 / 4e-109 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G15090 218 / 4e-70 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT3G01280 205 / 4e-65 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT3G49920 200 / 5e-64 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G57490 190 / 3e-59 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018683 [exp] 550 / 0 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10019284 [exp] 290 / 3e-98 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 269 / 6e-90 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10013271 [exp] 224 / 1e-72 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 212 / 1e-67 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 210 / 1e-66 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 209 / 1e-66 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 166 / 9e-50 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 139 / 6e-39 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016300 [exp] 369 / 1e-129 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.005G146800 [exp] 327 / 5e-113 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.007G055800 [exp] 317 / 3e-109 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.008G194900 [exp] 243 / 3e-80 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.017G078200 [exp] 235 / 5e-77 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.010G033500 [exp] 233 / 6e-76 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 222 / 8e-72 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.018G093900 [exp] 210 / 4e-67 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.001G294100 [exp] 193 / 9e-60 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.001G294000 [exp] 191 / 3e-59 AT5G67500 203 / 4e-64 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10007739 pacid=23149253 polypeptide=Lus10007739 locus=Lus10007739.g ID=Lus10007739.BGIv1.0 annot-version=v1.0 ATGACCTCCTCCGTTAATGGACCCGGTCTCTTCTCCGACTTCGGCAAGAAGGCTACAGATTTGCTTACCAGGGACTATCTCTCACACCAGAAGTTCTCAG TCTCTACTCTTACTGCTACCGGTGTGGCTCTTTCCTCAAATGTTGTTGAGAAAGGAGGTCTTTCTTCTGGAGAGATGGCAGCTCAATACAAACAGGAGAG GACTACTGTTGACTTCAAAATTGACACCGAGTCTAATGTGACATCAACTATTAGCTCTACTGACTTCCCATTTTCGTCTACCAAAATCATTGCTTCAACA AAAACCTTTGACGATGACTGGTGGAAGTCGGAAGTCCAGTATTTCCATCATCATGCTGCCGTCACTGCTGGTTTTAACCTGAAGAAGTCTCCAGCAGTTG ATTTCTCTGCAACTGTCGGTACTCCGAGCATTGCATTTGGTGCCGAGGCTAGCTACCTGACTTCCACAGGAGACTTTTGCAAGTACAATGCCGGTGTCAA CCTGACAAAACCAGATTTCATTGTCTCAGCGATTCTGGCTGACAAAGGAGACTCTATCAGAGTATCCTACTTGCATCATCTGGAAGAGCTGAATGGGGGT TCTATGGTGGCAGAGATCAGAAGGAAGTTCTCTACTAACGAGAACACTTTAACCGTCGGATGCTCGTATGTGGTTGACCGTCATACATTATGGAAAGCAA AGCTAAACAACCATGGAAATCTAGCAGCACTTCTCCAGCACGAGATCACACCCAAGTCCTTACTGACCGTATCTGGTGCATTTGACACCAAAGCTTTACA GAAGACTCCCAAATTTGGCGTCGGCCTCTCCCTGAAGCCTTGA
AA sequence Show only first row Show all	>Lus10007739 pacid=23149253 polypeptide=Lus10007739 locus=Lus10007739.g ID=Lus10007739.BGIv1.0 annot-version=v1.0 MTSSVNGPGLFSDFGKKATDLLTRDYLSHQKFSVSTLTATGVALSSNVVEKGGLSSGEMAAQYKQERTTVDFKIDTESNVTSTISSTDFPFSSTKIIAST KTFDDDWWKSEVQYFHHHAAVTAGFNLKKSPAVDFSATVGTPSIAFGAEASYLTSTGDFCKYNAGVNLTKPDFIVSAILADKGDSIRVSYLHHLEELNGG SMVAEIRRKFSTNENTLTVGCSYVVDRHTLWKAKLNNHGNLAALLQHEITPKSLLTVSGAFDTKALQKTPKFGVGLSLKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	0	1
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	1.4	0.9729
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	2.8	0.9700
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	3.9	0.9556
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	4.9	0.9555
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	5.2	0.9575
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	5.7	0.9559
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10023074 [exp]	8.2	0.9279
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	9.4	0.9528
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	11.8	0.9545
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	12.4	0.9446

Compare expression of checked genes

Lus10007739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.