Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43190 260 / 5e-82 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 107 / 7e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 79 / 2e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G33160 62 / 3e-10 F-box family protein (.1) AT3G61590 54 / 1e-07 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G30950 52 / 8e-07 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018682 [exp] 428 / 3e-149 AT5G43190 204 / 2e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 280 / 3e-90 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 104 / 8e-24 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 102 / 5e-23 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 77 / 9e-15 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 75 / 4e-14 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003029 [exp] 64 / 1e-10 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 62 / 5e-10 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007755 [exp] 44 / 0.0002 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118700 [exp] 350 / 1e-117 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 344 / 5e-115 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 109 / 1e-25 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 108 / 1e-25 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 87 / 5e-18 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 84 / 5e-17 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 71 / 4e-13 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G166500 [exp] 71 / 6e-13 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G062000 [exp] 55 / 5e-08 AT1G27340 83 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 51 / 1e-06 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007740 pacid=23149252 polypeptide=Lus10007740 locus=Lus10007740.g ID=Lus10007740.BGIv1.0 annot-version=v1.0 ATGTCTTTGGTGGAAGAGGAGCAAGGCAAAGTTACGGAGAAGATCTTCAACGGTGGGTCTCTTGCAAACATCGGATGTTTTACTACATCCCTCATCGGCG NNNNNNNNNNNNNNGCTCCTAAAACGCCCCCCCCGCCGACGACGACGTCCGGTTCCAAACTCAGACGAGGAGGCTGTTGTTTCTTGTATAGTGGGAGCTC CGGTTCTAGGAAGAGACGTCGTCGTGTCATTAGATGGAAACGTCCATTCTATTACGGCGTTAACACCGGAACTCCTACCACAGCGGACCAGGTATTCAAC CAAAATACAACTCGGACCAGCTCCACGTCGTCGGCAACACCAGCCGCCGGCTACTTAAAAACAGCACAGTCATCGCCGGAGATGGATCCGACTATTTGGA AAACGCTGCCGGAGGAGCTCCTGGACCAAATACTCTCCCTTGTACCTCCACAAACACTCTTGAATCTCCGACCAACTTGCAAACGCATTCGTTCTCTAAT CCTCTCCCCTTACTTCATCTCCAATTACTCTTCCTCCTCCTCCTCCTCCACCCAACCTTTCTTCTCCTCTTTCCTCCTCCTCTCCCACCCTCACTTCGGC AGCCACCGCTTCGCCGTCTACGACTCCCTCCTCCGCCGCTGGCGCAACTTCCCCTTGCCTGTCTCCGCCTTCCTCCCCTGCCGCACCTCCTCCTCCTCCT CCTTCACTCTCCTCGCCTCCACCAAGGGACTCCTCTGCTTCTCTCGCCCTTCCACAACTTCGTCCTTCCTCATCTGCAATTTATTGACTAGATCCACCAG GGTTGTCAAATTACCCAATTACCCCTGCTCAAATGATTCAATTACTCTCGTCCCGACCCGATCCGGTTACAAAATATTCACTCTCTGCCCCGGAACTTCC CGATCCGTCTCTGTTTACGACTCCGCCAACCGGCAATGGCACCAATCTGAGGACGCCACTCCTAATATAAAGGCTAGCTACCACAGGAGGGAAGGAGTCA TTTGCGACGGGTCGCTGTATTTCTACACCGGGGATCCTTATTCGATCGTTGGTTACGATCTCGAGGCTAGGAGATGGGACGTTCTCAACGGCGGAATCCC CACCATTGATCGAATGGTGTTCACGAGGTTGGTAAGCGACGGCGAGAAGAAGATGTACTTGATAGGAGGGATCGCGACGTATTGGATATCGAGCGGGGTC AAAGTGTGGGAGCTGGACGTGGAAAGGAATTGGGTGGAAATCGGAAGCTTGCCTGAGGAGATTTGCCGGAAACTTGTAGGAGTTTGTTACCATAACTACG AGCATGTTTACTGTATGTGGCACAGGGGAATGATATGTTTATGCTGTTATACTTGGCCGGAGATCCTCTACTACGACGTTGCGGCGAGGGAATGGGGATG GTTGCCGAAATGTCCTCTCTTGCCGGAGAAAGGCAGCTGTGGCTTCACTTGGTTCTCTGTTGTTCCTCAGCTCTACACATTAGTTTGA
AA sequence Show only first row Show all	>Lus10007740 pacid=23149252 polypeptide=Lus10007740 locus=Lus10007740.g ID=Lus10007740.BGIv1.0 annot-version=v1.0 MSLVEEEQGKVTEKIFNGGSLANIGCFTTSLIGXXXXXAPKTPPPPTTTSGSKLRRGGCCFLYSGSSGSRKRRRRVIRWKRPFYYGVNTGTPTTADQVFN QNTTRTSSTSSATPAAGYLKTAQSSPEMDPTIWKTLPEELLDQILSLVPPQTLLNLRPTCKRIRSLILSPYFISNYSSSSSSSTQPFFSSFLLLSHPHFG SHRFAVYDSLLRRWRNFPLPVSAFLPCRTSSSSSFTLLASTKGLLCFSRPSTTSSFLICNLLTRSTRVVKLPNYPCSNDSITLVPTRSGYKIFTLCPGTS RSVSVYDSANRQWHQSEDATPNIKASYHRREGVICDGSLYFYTGDPYSIVGYDLEARRWDVLNGGIPTIDRMVFTRLVSDGEKKMYLIGGIATYWISSGV KVWELDVERNWVEIGSLPEEICRKLVGVCYHNYEHVYCMWHRGMICLCCYTWPEILYYDVAAREWGWLPKCPLLPEKGSCGFTWFSVVPQLYTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	4.8	0.8910
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	6.5	0.8862
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	7.5	0.8125
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	9.2	0.8806
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	9.3	0.8810
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	9.3	0.8097
					Lus10038978 [exp]	9.7	0.8767
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	11.0	0.8738
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	13.4	0.8477
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	15.3	0.8538

Compare expression of checked genes

Lus10007740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.