Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 305 / 9e-90 PHD finger transcription factor, putative (.1) AT3G14980 238 / 9e-66 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36740 232 / 8e-64 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 231 / 2e-63 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G63900 218 / 6e-62 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 224 / 3e-61 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 213 / 3e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G36720 154 / 2e-38 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 151 / 2e-37 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 138 / 2e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018681 [exp] 1429 / 0 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 318 / 2e-92 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 307 / 1e-88 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 265 / 2e-78 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10006110 [exp] 244 / 2e-67 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 238 / 2e-65 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 223 / 1e-60 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10025386 [exp] 220 / 2e-60 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10022053 [exp] 220 / 1e-59 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118600 [exp] 430 / 1e-137 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.009G072600 [exp] 339 / 7e-101 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.001G392801 [exp] 252 / 4e-70 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 249 / 3e-69 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 236 / 8e-65 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 233 / 7e-64 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 226 / 2e-61 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 212 / 3e-59 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.006G120200 [exp] 166 / 4e-42 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 157 / 3e-39 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10007741 pacid=23149262 polypeptide=Lus10007741 locus=Lus10007741.g ID=Lus10007741.BGIv1.0 annot-version=v1.0 ATGGCGGTGGACAAGCAGTTAGCCAACAAGGCCCATTATTTCCAGCTTAACCAGAAGGTGGAAATCAAGACCTTCGAGGTGGGTTTCGAAGGCTCATGGC ACACGGCAACCGTCGTCCTCTCAGACGAACGGTGTTTCCACATCAAATACGATCGTTCCCTGTTTCTCGACGACGGTCCTGACAGGATTGTGGAGGCGAT TTCCCCTTTACCTGGTTCCATATGCACTCGATTGAGACCCATTCCCCCTCCTGCCACTTGCGGCCTTCTGGGTTTCACTTACGGTCTCTGCGTCGACGTC TGGAGACACAATGCCTGGTGGGAGGCCGTCGTCGCCGATCACCTCAACCAGTCGGATCAGAGGATCGTCTTCTTGATGGATTCCTGCAGGGAGATTCGGG TTCGAATCGACAATTTGAGGGTTACGCAGGACTGGGAATCCTCCACTGGAGTTTGGAGGCGGCGTGGGAATTGGCCGTTGATTGACTGGATCGGCTTGGG CGTCAACGGACCCACACTCTTGCCGGATCAAGAATCCGACTACGGCGGATTAGGAATCGGAAAACTGGAAATTGAAAGTGAAGAGCGGCAGGACACTAGT ACGACGCCGTTTAGCCATGATGCAGGGAAGGGGGAGACGAAGGGGAAGAAAAGGCGGAGCTGGGAGCCGGTCGGGTCGGATCTTTTACCAGGACCCGAGT TCTGCCCGAGAATCGTTACGGAATACGCTTCATTCGGTCCCGATAAGCGGCCGCCGGAGACTGCTGTGATGGGCGTAAGGAAGCATCTGGCGGCGTTGGG ATGGAAGATCGAGTACAGGAAGGAAAAGACTGCATACAGATTTCGATACATCTCTCCTGACGAAACCCTAACTTATTTTTCTCTTCGACTCCTCTGTCAG GATCTGAGAGAACCAGTCCTGGGAAACTCCCAAACCCAAAAGAGGAATAAAAGGAATAGAGAACCTGACACTAATTCTGATTCTGAAAGATGCACCAAAA AAAGAAGCACGTTTGATAATCATAGTAATCAAGAAGAAAGTGCAAATTCTGACTGTGAATTCGGATGGGCTGCTTCTCCTGATTCGTTCCTCAGGCCACC AAGGGCTTCTGTTTCTACGAGATCACAGCAGCAGAAGAAGATTCCTGATGAAGAGTGTGGAGTCGGATCAACGACTGGGTCGGTTGGAATCAAGCTGAAG GCGGCTAGGAAGTCATGTTCGTTGTTGTCTACACTGATAGACAACAACGTGTATCTTCTAGATGCAGAAGTGAGATGTCATAGCAAGAACATTGTGAAGA AAGGAATCTTAAAGCGGGACGGGATCCATTGTCGATGCTGCAACAAGTGCTACAGCATGACAGGTTTCAAGAGTCATAGTGGGAGCAAGAAGCACAGACC AGCAGCAAGCATTTTCCTAGAAGACGGCAAGTCTCTGTCAGAATGTTATGGCAAAATCCTGAAGAAGAGGCGGAAAGGGGCCAGGAAGAAGAAGATTGAA GATTTGGAGAATAAAGACCATAATGACTTGATTTGCTCGGTCTGTCGTGATGTTGGAGACTTGTTGTGCTGTGATAGTTGCCCATCTTCGTTTCATCACA CTTGCGTCGGCCTGGAGAAGCTTCCTGATGGGGACTGGTTCTGCCCATTCTGCTGCTGTGATATTTGCGGCCAACTCAATTTCGGAGACAGTAATGATGA TCAGCTTCTGAGCTGCGATCACTGCCAGCTCAAGTTCCATGGTAGATGTTTGACGAAGAAAGGGTTCACTGGCTCTGTAACAAGAACTGAGAAGAGGAAT TGGTTTTGTAGCGTGGAGTGTGGAACCGTGTTCTCAGGACTAGAGGAGCTAGTGGGGAAACCCATCTCTGTTGGCGAAGACGATCTCACCTGGACACTGC TGAGGTCAAGCGAAGAAGAGAGTTCAGAGGCGAGAACGAAACTCAATTCGGCCATAGATGTTCTGCACGAATGTTTCGAGCCGTTCAAGGATAATTTCTC AGGGACGGACATCGTTGAGGACCTGACATTCAGCAAAAGGTCGGACCTCCAGAGACTCAACTTCCAGAGATTCTACACGATTGTGATCCAGAGGAGAGGG GAAGTAATGAGCTCAGCTAATGTCAGAATCTTGGGGAAGATGCTGGCCGAAATGCCTCTAATTGGCACCAAGTTTCAGTACAGGGGACAAGGTTTATGCA GAGTGCTGGTAAATGAGTTGGAGAAGCAGCTCATGAGGTTTGGAGTGGAGAAGCTGTTGTTGCCGGCTGCTCATAGCGTACTCGACATGTGGACGGACAC TTTCCGCTTCTCTGAACTTGGCTCTGAAGACAGGAAGCTCTTTGGCTGTAGATTCATGGAGTTTGAAGGTACTGTCACTTGCCAAAAGCTTATCGTATAG
AA sequence Show only first row Show all	>Lus10007741 pacid=23149262 polypeptide=Lus10007741 locus=Lus10007741.g ID=Lus10007741.BGIv1.0 annot-version=v1.0 MAVDKQLANKAHYFQLNQKVEIKTFEVGFEGSWHTATVVLSDERCFHIKYDRSLFLDDGPDRIVEAISPLPGSICTRLRPIPPPATCGLLGFTYGLCVDV WRHNAWWEAVVADHLNQSDQRIVFLMDSCREIRVRIDNLRVTQDWESSTGVWRRRGNWPLIDWIGLGVNGPTLLPDQESDYGGLGIGKLEIESEERQDTS TTPFSHDAGKGETKGKKRRSWEPVGSDLLPGPEFCPRIVTEYASFGPDKRPPETAVMGVRKHLAALGWKIEYRKEKTAYRFRYISPDETLTYFSLRLLCQ DLREPVLGNSQTQKRNKRNREPDTNSDSERCTKKRSTFDNHSNQEESANSDCEFGWAASPDSFLRPPRASVSTRSQQQKKIPDEECGVGSTTGSVGIKLK AARKSCSLLSTLIDNNVYLLDAEVRCHSKNIVKKGILKRDGIHCRCCNKCYSMTGFKSHSGSKKHRPAASIFLEDGKSLSECYGKILKKRRKGARKKKIE DLENKDHNDLICSVCRDVGDLLCCDSCPSSFHHTCVGLEKLPDGDWFCPFCCCDICGQLNFGDSNDDQLLSCDHCQLKFHGRCLTKKGFTGSVTRTEKRN WFCSVECGTVFSGLEELVGKPISVGEDDLTWTLLRSSEEESSEARTKLNSAIDVLHECFEPFKDNFSGTDIVEDLTFSKRSDLQRLNFQRFYTIVIQRRG EVMSSANVRILGKMLAEMPLIGTKFQYRGQGLCRVLVNELEKQLMRFGVEKLLLPAAHSVLDMWTDTFRFSELGSEDRKLFGCRFMEFEGTVTCQKLIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10007741 [exp]	0	1
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10036637 [exp]	1.4	0.7962
AT2G36895			unknown protein		Lus10001393 [exp]	1.4	0.8122
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10031654 [exp]	3.5	0.7426
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	8.8	0.7211
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	12.5	0.7651
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	28.5	0.6186
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	29.2	0.7249
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	31.1	0.7351
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	32.3	0.7079
					Lus10026124 [exp]	57.9	0.6665

Compare expression of checked genes

Lus10007741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.