Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27840 615 / 0 ATCSA-1 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G19750 591 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 61 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G16780 59 / 2e-09 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G50230 59 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G15550 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 57 / 1e-08 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018680 [exp] 841 / 0 AT1G27840 629 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10042333 [exp] 62 / 1e-10 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10029221 [exp] 61 / 6e-10 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10007274 [exp] 61 / 7e-10 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10031629 [exp] 61 / 1e-09 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10026094 [exp] 57 / 9e-09 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10041007 [exp] 58 / 1e-08 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024972 [exp] 58 / 1e-08 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10013452 [exp] 58 / 1e-08 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016100 [exp] 692 / 0 AT1G27840 660 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.019G087200 [exp] 67 / 7e-12 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.016G052800 [exp] 59 / 2e-09 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G045500 [exp] 60 / 3e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G087200 [exp] 59 / 3e-09 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 57 / 9e-09 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.010G255400 [exp] 58 / 1e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 57 / 1e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 53 / 6e-08 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.009G058000 [exp] 54 / 1e-07 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10007742 pacid=23149231 polypeptide=Lus10007742 locus=Lus10007742.g ID=Lus10007742.BGIv1.0 annot-version=v1.0 ATGTGGAGGGAAATTGCAGACAGAGAAGCGGGCAAAACCAGACCAAATTCCTTCCAAAGCCACATCGCATCCGGCTTGAGCTCCGATCTCCAGCTCTCTA ACCACAAAGACATCGTTTCTCCTCACCGAGGATCCGTTAATTCTCTCCAGGTTGATTTGACAGAGGGAAGATACTTGTTGTCCGGTGCAGCGGATGCCTC CGCCGCTGTTTTCGATGTTCAACGGCCGACGGAGTATGAAGGCGGAGGTGTTATCGCTAAGCACCGCCATCTATTTTCCATAGACAAGCAGCACAAGGCA GGGCATAAATTTTCCATTTCGACGGCGATATGGTATCCGATAGATACCGGTCTGTTTGTCACTGGCTCTTACGATCATTCTATCAAAGTCTGGGATACGA ATAGCACGCAGGTGGTGATGAATTTCAAAATGCCTGGGAAGGTGTACCGAACTGCTATGTCTCCGGTGGCAACTTCTCATATGCTGATTGCCGCCGGGAC GGAAGATGTTCAAGTTCGACTTTGTGATATTGCCTCGGGGGCATTTGCGCATACACTTTCCGGTCACCGGGATGGTGTTATGACGGTAGAATGGTCTACT TCAAGTGAATGGGTTTTGATTACTGGAGGATGCGATGGTGCTATACGGTTTTGGGACATTAGGCGGGCGGGGTGTTTTCGTGTCTTGGATCAATCCCGAA CTCAGCTAGGCAGGCGACCGCCCGTTCCACATAGCTCATTGATGAATAAGAAGAAAAATGTGAATGGGAATGGCGCAAAGCAGTCAGGTCTTGGTCGGAC TCCAGGAAAGGGAGCTGCTAAACAGAGGGTACACCCAGGGATGTTATCCACTCTAGATCGTGCTACTGCTCACTACGGTGCTGTCACAGCTTCCAAAATA ACTGGAGATGGCATGTATCTATTCAGTGCAGGGTCTGATTCAAGGATAAGGTTGTGGGACATTGAATCGGGCTGCAATACTCTTGTGAACTTTGAAACTG TGAGATTACAAACTAGTAAGCCGATTCAGCTGGCAACTTGCGGAAATTCCAACATGGTATTTGTTCCATGCATGACAGCCGTGAAAGCATTCGATGTTTG GTCGGGGAAAACGTCCATGGTTCTTCGTGGCCATTATGAAAACGTGAATTGCTGTTGGTTTAGTTCCCAAGATCAGGAGCTGTACACAGGTGGGAATGAT AGACAAATTCTGGTCTGGTCTTCTTCATCCAAACCTCAGGAGGATTTCTGTGTGGCTGAAGATGGAGATAACTGGAGCGACTGA
AA sequence Show only first row Show all	>Lus10007742 pacid=23149231 polypeptide=Lus10007742 locus=Lus10007742.g ID=Lus10007742.BGIv1.0 annot-version=v1.0 MWREIADREAGKTRPNSFQSHIASGLSSDLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGAADASAAVFDVQRPTEYEGGGVIAKHRHLFSIDKQHKA GHKFSISTAIWYPIDTGLFVTGSYDHSIKVWDTNSTQVVMNFKMPGKVYRTAMSPVATSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWST SSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSRTQLGRRPPVPHSSLMNKKKNVNGNGAKQSGLGRTPGKGAAKQRVHPGMLSTLDRATAHYGAVTASKI TGDGMYLFSAGSDSRIRLWDIESGCNTLVNFETVRLQTSKPIQLATCGNSNMVFVPCMTAVKAFDVWSGKTSMVLRGHYENVNCCWFSSQDQELYTGGND RQILVWSSSSKPQEDFCVAEDGDNWSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10007742 [exp]	0	1
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10003745 [exp]	1.7	0.8710
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	3.7	0.8809
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	14.3	0.8673
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	15.9	0.8686
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	19.7	0.8795
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	21.0	0.8495
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005169 [exp]	21.3	0.8370
AT2G25605			unknown protein		Lus10008087 [exp]	22.1	0.8151
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10005418 [exp]	22.5	0.8458
AT3G61800			unknown protein		Lus10004000 [exp]	26.1	0.8626

Compare expression of checked genes

Lus10007742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.