Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27460 150 / 1e-41 NPGR1 no pollen germination related 1 (.1) AT4G28600 94 / 8e-22 NPGR2 no pollen germination related 2 (.1) AT2G43040 84 / 2e-18 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT3G11540 42 / 0.0002 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 40 / 0.0007 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018678 [exp] 190 / 4e-57 AT1G27460 454 / 1e-152 no pollen germination related 1 (.1) Lus10018679 [exp] 153 / 1e-47 AT1G27460 186 / 2e-56 no pollen germination related 1 (.1) Lus10008236 [exp] 107 / 3e-26 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 103 / 3e-25 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 100 / 8e-24 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 98 / 3e-23 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10033595 [exp] 92 / 2e-21 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 92 / 3e-21 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10020725 [exp] 82 / 1e-17 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118500 [exp] 160 / 2e-45 AT1G27460 868 / 0.0 no pollen germination related 1 (.1) Potri.014G016000 [exp] 159 / 9e-45 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.008G169500 [exp] 116 / 9e-30 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 100 / 6e-24 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 91 / 7e-21 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 84 / 2e-18 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.013G051400 [exp] 43 / 0.0001 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 43 / 0.0001 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075700 [exp] 40 / 0.0008 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10007743 pacid=23149258 polypeptide=Lus10007743 locus=Lus10007743.g ID=Lus10007743.BGIv1.0 annot-version=v1.0 ATGTTGTGTGCTTGCTCCGGAGAGCAGTTCAAATTCGAGGAGGCGCCGCCGTCGCCGGTTTCTCTGGCCACCAGAGATTTTTCGGTCAGAGGACTGTCTT CCAGGACAACAGGCGACTGGGGGGTCAAACCGGGGGGAGTCCAAACTCGAGGATATCCAGCTCTTCAGGTTTTCCAAGGAATTGACATCAGAGGCTTGAA GGCCAAAATGATCAGAGCTATTATTGGAAGAACTCATCAGCCTCCAAGGAAGCCTCGATCCAAAGGTGGTGAAATCTCCTCACCAACAACTCTCATGTCA ATGCACTCCGTCACTCTTCTTCTCGAAGCTCTCTTCCTCAAGGCAAAGTCACTCGAGCAATTAGCACTTTTCACAGGAACATCGCTGGAAGCACAAGAAC TATACAGGGAAGCGCTGGTTTCTTTCTCAATGTCATTATCGATAGAACCAGACTATGTACCGAGCCTCGTGTCGACAGCAGCGGTGCTGATGAAGCTTGG CGGGGAATCCATTCCGATTGCACGAAGCTTTCTAATGAACGCACTGCGTTTGGATCCAACAAATCACGAGGCATGGATGAACCTTGGGTTGATTTCGAAG CAGCAAGGCTCGTTGCAGCAAGCTGCAGACTGTTTTCAGGCCGCTTATGAGCTGAAACTATCTGCTCCAGTCGAAAGCTTCATTCCTTGA
AA sequence Show only first row Show all	>Lus10007743 pacid=23149258 polypeptide=Lus10007743 locus=Lus10007743.g ID=Lus10007743.BGIv1.0 annot-version=v1.0 MLCACSGEQFKFEEAPPSPVSLATRDFSVRGLSSRTTGDWGVKPGGVQTRGYPALQVFQGIDIRGLKAKMIRAIIGRTHQPPRKPRSKGGEISSPTTLMS MHSVTLLLEALFLKAKSLEQLALFTGTSLEAQELYREALVSFSMSLSIEPDYVPSLVSTAAVLMKLGGESIPIARSFLMNALRLDPTNHEAWMNLGLISK QQGSLQQAADCFQAAYELKLSAPVESFIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	0	1
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10035899 [exp]	1.0	0.8377
AT4G08910			unknown protein		Lus10025524 [exp]	3.0	0.8322
AT1G27460		NPGR1	no pollen germination related ...		Lus10018678 [exp]	4.2	0.8042
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	4.2	0.8361
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	9.5	0.7985
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	10.4	0.8242
AT4G30400			RING/U-box superfamily protein...		Lus10023206 [exp]	12.8	0.7689
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	15.6	0.7904
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	16.7	0.7955
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	18.3	0.7346

Compare expression of checked genes

Lus10007743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.