Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59600 359 / 1e-123 ZCW7 ZCW7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018676 [exp] 562 / 0 AT1G59600 407 / 4e-143 ZCW7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118300 [exp] 402 / 2e-140 AT1G59600 367 / 2e-127 ZCW7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007745 pacid=23149240 polypeptide=Lus10007745 locus=Lus10007745.g ID=Lus10007745.BGIv1.0 annot-version=v1.0 ATGGGGATACGGTCGTTGGAATCGCTGCCGCCGACGGAGACACTGGAGATCGAGAATGGGTTATCGCTAGCGCCTCGAGTGAAGCTGGAGCTGGTCGTCC ATCCGACACCGTCCTCCGTCGCTAAACAGTTGGACGAGTGGAAGCTGAAGCGCGCTCTGACGGAGTATCTGAAGACTTCGCTCTCAGTCTCAATCGTGGT CCCGGAGGAGGACCTGGAGTTCAGGCGGTACAAGGACCTGAAGAAGCGGAAACGCGAGGATCCCGTGGCGCACGGCACTCTTTCGATTCGAGACTTAGGG TTCCTGAGCGGGAAGAAGAGAGGCGTAGTAGAAGAGGGGAAAGAGGAAGACGTTAAGGAAGTGGAGAAGAAGTTTCTGGAATGGAGGAAGTACGTCGTTG AGAAGCTGGATGGAATCGAGCTGAACTTAGAAGGAGATGAGTATAAACTGAGTGTTGCTGTGCCGGCGTCGGATGATTTTGAAGCAATGAAGAAAGATTG GGAGGAGTTATATGCTTTTGGCAATCAAGGGTGCGCAAGAGGAGGAAATGCAGAGCCAGACACAATCGTCATAAGAGGGGTACCATCTCGATGGTTTGCC GAGCCGAGAGTTTCTTCAAAGCCTTCAATGCTCGTTACGCATACCATTTTCTCGGCGTTTGGGAAGATAAGGAATCTTAGTGTGGTCGAGGACGTTGAAG ATAAGGTCGATGGAGACATAATTTCCGGTCTGCATTGCAAGATTGTCGTTCAGTTTGACAAACACACAGATTTCTGCAACGCTCTTAGGGTCTTGTGTGG TCGTTCGATGCAAAAGCAAGGATCTCGATTAAAAGCGGATTACGAGGTGAGGTGGAGCAAGGAAGGTGTCTTCCAGAATGCGAGAAATGAAGTTGCAGAG AACAAGAGCCGCACAGCAGTGAGAAATGAAGCACCACCTTCGAGAGGTGAGCCATATGTTTCGAGATTCAACTCAGAGGATACGCGGCGAAAGAGATTCA AGGTTAGTAAAGTAAAATCAGAGCAGTTTTTAAACGTTGTGGCTTCTTTCTATAGATTTGTCAAACCCTCTGAAGTCTGA
AA sequence Show only first row Show all	>Lus10007745 pacid=23149240 polypeptide=Lus10007745 locus=Lus10007745.g ID=Lus10007745.BGIv1.0 annot-version=v1.0 MGIRSLESLPPTETLEIENGLSLAPRVKLELVVHPTPSSVAKQLDEWKLKRALTEYLKTSLSVSIVVPEEDLEFRRYKDLKKRKREDPVAHGTLSIRDLG FLSGKKRGVVEEGKEEDVKEVEKKFLEWRKYVVEKLDGIELNLEGDEYKLSVAVPASDDFEAMKKDWEELYAFGNQGCARGGNAEPDTIVIRGVPSRWFA EPRVSSKPSMLVTHTIFSAFGKIRNLSVVEDVEDKVDGDIISGLHCKIVVQFDKHTDFCNALRVLCGRSMQKQGSRLKADYEVRWSKEGVFQNARNEVAE NKSRTAVRNEAPPSRGEPYVSRFNSEDTRRKRFKVSKVKSEQFLNVVASFYRFVKPSEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59600		ZCW7	ZCW7 (.1)		Lus10007745 [exp]	0	1
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010433 [exp]	2.8	0.8504
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	10.1	0.8318
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	12.6	0.8010
AT1G24560			unknown protein		Lus10029143 [exp]	13.1	0.8006
AT4G32930			unknown protein		Lus10005503 [exp]	15.8	0.8329
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	16.3	0.8018
AT3G25120			Mitochondrial import inner mem...		Lus10008094 [exp]	25.5	0.8186
AT3G62140			unknown protein		Lus10038035 [exp]	29.0	0.8256
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	33.2	0.7554
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10007576 [exp]	33.5	0.8169

Compare expression of checked genes

Lus10007745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.