Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59590 89 / 9e-21 ZCF37 ZCF37 (.1) AT1G10220 77 / 3e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118200 [exp] 140 / 2e-39 AT1G59590 81 / 5e-18 ZCF37 (.1) Potri.014G015800 [exp] 125 / 5e-34 AT1G59590 101 / 9e-26 ZCF37 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007746 pacid=23149256 polypeptide=Lus10007746 locus=Lus10007746.g ID=Lus10007746.BGIv1.0 annot-version=v1.0 ATGCTGAGTCCATTTATCTGCGGAGCTAACTTTCAAAACGACGAAGACCTCCCTTGCACCGCATCTTCTTCATCTCAATCTCCAAGGAGATGCGGCGGCA GCAGGAGGCACTCCAAGAACAACCCTTACTCCAACCGCGGACTCGACAAATTCTCCGCCCTCCTCTCCGATCTCACCGAGAAGCGCCGTCAGATCTACTC CACCATGAGCTCTCAGGATCCTCCTCTCGTCCGATTCGTCTTCCCTGGTTCCAGCGACGATTGCGTTCCTGTTGTCATCAAGTTGAGAGATCCTAAGCTC GCTAAATCAGGGGACAATCATCACCATCATCATCATAAGCAATTACGGCACAGCGATTCTGCTGCTTCGGCCACCGCGTCCGTGGACGCGGTGGCTTCTT CTTCTGATCAGAACAATCATCACAGGTTGTCGCCGACTGAGGAGATGGATAACGAATCAGCTGACCTAGGCGGCGGCGGTGTAGGAACAGATTGCATTTG CGAGGGGAAAAGATTGATCTCGGTTTTGGCCGGTCAGTCATGGAGGAGGCCGGCAGTTTATGTCCCCGTGGCGTTGATTCTGATTCTCCTGTTTCTAGCC GTTTTCGGGAAGTCGGTTGCGATTCTATGCACGTCCATCGGGTGGTATTTGATCCCAACTCTGAGTTCGAAGCGGCCGGCGCCCAAGAGGGAATACGTCA GGAAGTTGAGCGGCGGCGTAAGGAATAAAGAGGTGATAATTACTAGTCCGAAGAATCGGATGGCATCGGCGGCGACATCTCCGAAGAGCGGGAATGGTAA GAAGAAGGAACTTGCGAGGAAGTTGAGTGAGATGAAGGCGGTCAAGGCATATCGAGCAGCTTCTCCTCCTCATCCTGCTGCTGCTGCGGTCAAATCTGGA TCGCCGCCATCTCTGTCGAGAGAATTGAAGCACAGGAAGAGTTTCTAG
AA sequence Show only first row Show all	>Lus10007746 pacid=23149256 polypeptide=Lus10007746 locus=Lus10007746.g ID=Lus10007746.BGIv1.0 annot-version=v1.0 MLSPFICGANFQNDEDLPCTASSSSQSPRRCGGSRRHSKNNPYSNRGLDKFSALLSDLTEKRRQIYSTMSSQDPPLVRFVFPGSSDDCVPVVIKLRDPKL AKSGDNHHHHHHKQLRHSDSAASATASVDAVASSSDQNNHHRLSPTEEMDNESADLGGGGVGTDCICEGKRLISVLAGQSWRRPAVYVPVALILILLFLA VFGKSVAILCTSIGWYLIPTLSSKRPAPKREYVRKLSGGVRNKEVIITSPKNRMASAATSPKSGNGKKKELARKLSEMKAVKAYRAASPPHPAAAAVKSG SPPSLSRELKHRKSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	0	1
AT1G76070			unknown protein		Lus10034552 [exp]	1.4	0.8568
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	4.5	0.8200
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	5.3	0.8216
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	6.3	0.7936
AT1G76600			unknown protein		Lus10012442 [exp]	6.7	0.8231
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	7.7	0.8335
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	11.4	0.7914
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	12.0	0.7668
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	12.7	0.8055
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	19.4	0.7929

Compare expression of checked genes

Lus10007746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.