Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22370 395 / 4e-140 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G12790 181 / 2e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT4G21800 82 / 7e-18 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018675 [exp] 472 / 4e-170 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041086 [exp] 181 / 7e-56 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10036411 [exp] 184 / 4e-55 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10040022 [exp] 77 / 4e-16 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019602 [exp] 77 / 6e-16 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015700 [exp] 434 / 3e-155 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G174200 [exp] 177 / 1e-54 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.008G103000 [exp] 81 / 2e-17 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G148000 [exp] 80 / 4e-17 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03029 [flax] [poplar] ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence Show only first row Show all	>Lus10007747 pacid=23149254 polypeptide=Lus10007747 locus=Lus10007747.g ID=Lus10007747.BGIv1.0 annot-version=v1.0 ATGGTGTTTGGTCAAGTAGTTATCGGCCCTCCTGGTTCCGGTAAAACCACTTACTGCAATGGCATGTCTCAGTTCCTCCCTCTCATCGGCAGGAAAGTCG CTGTCATCAATTTGGATCCCGCCAATGATTCCTTGCCTTACGATTGTGCCGTAAATATCGAGGATCTCATCAAACTAAGTGATGTAATGGCAGAGCATTC TCTCGGCCCAAACGGAGGTCTAGTTTACTGCATGGACTATTTGGAGAAGAATATTGACTGGTTGCAATCCAAGTTGCAACCTTTGTTGAAAGACCACTAT CTTGTTTTTGATTTCCCTGGTCAGGTTGAACTGTTCTTCCTTCATTCAAATGCCAAGAATATTATTATGAAGCTGATCAAGAGGCTGAACCTTAGGTTGA CTGCGGTGCATTTAGTTGACGCCCATCTCTGTAGTGATGCAAACAAGTATATTAGTGGATTGCTGCTATCATTGTCTACCATGATTCACATGGAACTTCC GCACATCAATGTCTTGTCTAAGATCGATCTAATTGAGAGCTATGGAAAGTTGGCTTTCAACTTGGATTTCTACACGGACGTGCAAGACTTGTCATATTTG CAGCATCATATTGAACAGGATCCCCGTGCAGCAAAGTACAGAAAACTTACAAAGGAGCTGTGCGAGGTTGTGGAAAATTACGGCCTCATCACAGTTGCAG CAGTGCAAGAGAAGTACATGAAAGATGAAGATGTATTCGACGACAGCGACAAGCCCGATATTTAG
AA sequence Show only first row Show all	>Lus10007747 pacid=23149254 polypeptide=Lus10007747 locus=Lus10007747.g ID=Lus10007747.BGIv1.0 annot-version=v1.0 MVFGQVVIGPPGSGKTTYCNGMSQFLPLIGRKVAVINLDPANDSLPYDCAVNIEDLIKLSDVMAEHSLGPNGGLVYCMDYLEKNIDWLQSKLQPLLKDHY LVFDFPGQVELFFLHSNAKNIIMKLIKRLNLRLTAVHLVDAHLCSDANKYISGLLLSLSTMIHMELPHINVLSKIDLIESYGKLAFNLDFYTDVQDLSYL QHHIEQDPRAAKYRKLTKELCEVVENYGLITVAAVQEKYMKDEDVFDDSDKPDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	0	1
AT3G59090			unknown protein		Lus10004930 [exp]	2.4	0.9017
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	4.2	0.8707
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	4.5	0.9010
AT4G20160			unknown protein		Lus10036249 [exp]	7.7	0.8771
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10029584 [exp]	9.5	0.8607
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	15.2	0.8654
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	16.9	0.7794
AT3G61260			Remorin family protein (.1)		Lus10014785 [exp]	17.0	0.8600
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	18.1	0.8744
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10036730 [exp]	20.0	0.8247

Compare expression of checked genes

Lus10007747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.