Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10200 310 / 2e-108 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1) AT2G39900 203 / 2e-66 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT3G55770 200 / 3e-65 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT1G01780 182 / 3e-58 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT2G45800 183 / 4e-58 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT3G61230 180 / 5e-57 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018674 [exp] 399 / 9e-144 AT1G10200 323 / 4e-114 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10027305 [exp] 274 / 3e-94 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10039010 [exp] 274 / 4e-94 AT1G10200 285 / 2e-99 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 266 / 2e-91 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10004230 [exp] 266 / 2e-91 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10010455 [exp] 254 / 2e-86 AT1G10200 277 / 3e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10043462 [exp] 247 / 2e-83 AT1G10200 260 / 2e-89 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10034123 [exp] 229 / 3e-76 AT3G55770 244 / 1e-82 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Lus10003822 [exp] 220 / 7e-70 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118000 [exp] 340 / 3e-120 AT1G10200 325 / 7e-115 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.014G015600 [exp] 338 / 7e-120 AT1G10200 327 / 8e-116 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 312 / 2e-109 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.009G087200 [exp] 308 / 8e-108 AT1G10200 316 / 2e-111 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.015G072400 [exp] 268 / 4e-92 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.012G077200 [exp] 266 / 3e-91 AT1G10200 268 / 2e-92 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.010G193800 [exp] 207 / 4e-68 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.008G063600 [exp] 207 / 6e-68 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.003G124300 [exp] 186 / 1e-59 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.014G080900 [exp] 182 / 4e-58 AT1G01780 307 / 2e-107 PLIM2b, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10007748 pacid=23149265 polypeptide=Lus10007748 locus=Lus10007748.g ID=Lus10007748.BGIv1.0 annot-version=v1.0 ATGGCGTTTGCTGGTACAACTCAGAAATGTATGGCATGTGAAAAGACTGTTTATCTCGTTGACAAGTTGACGGCCGATAATCGGATTTATCACAAGGCCT GCTTCAGGTGCCATCACTGCAGAGGAACTCTCAAGCTTGGCAATTACAATTCCTTTGAAGGAGTTCTCTACTGCAGGCCACACTTTGATCAGCTCTTCAA AAGAACTGGAAGTCTTGATAAAAGCTTTGATGGTAGACTAACATATAAGTTAAAGCCCCTGGGTTCCTTATTTCGCTTTAAAGTCACTTCAGATAGAACT CCCAAGATTGCAAAACCAGAGAAACCTATTGACACTGAGCAGAAACCTATAGTAGCTAAGGTGTCAAACATGTTTGGTGGAACTAGAGAGAAATGTTTCT GCTGCAAGAAAACTGTCTACCCAACTGAGAAGGTATCAGTGAATGGAACTCCTTACCACAAAAGCTGCTTCAAATGCATCCATGGAGGGTGTGTGATTAG TCCGTCCAACTACATCGCACATGAAGGCCGGCTCTACTGCAAACACCATCACAATCAGCTCATCAAGGAAAAGGGTAACTTGAGCCAGCTTGAGGGTGAT GCTGATCATGTTCCTGCAAATCAGAAAGCTGCTAGTATTGCTGCAACAGAAGTATCTGCTGAATCGTAA
AA sequence Show only first row Show all	>Lus10007748 pacid=23149265 polypeptide=Lus10007748 locus=Lus10007748.g ID=Lus10007748.BGIv1.0 annot-version=v1.0 MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFDGRLTYKLKPLGSLFRFKVTSDRT PKIAKPEKPIDTEQKPIVAKVSNMFGGTREKCFCCKKTVYPTEKVSVNGTPYHKSCFKCIHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQLEGD ADHVPANQKAASIAATEVSAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	0	1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	1.0	0.9563
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	2.0	0.8850
AT1G22790			unknown protein		Lus10028691 [exp]	2.2	0.8266
AT1G06980			unknown protein		Lus10038171 [exp]	2.4	0.8461
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	2.8	0.8303
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	4.9	0.8153
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	5.7	0.8072
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	8.1	0.7944
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	9.5	0.8116
AT1G04360			RING/U-box superfamily protein...		Lus10000710 [exp]	9.7	0.7816

Compare expression of checked genes

Lus10007748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.