Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12350 190 / 1e-57 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018673 [exp] 468 / 1e-166 AT3G12350 365 / 1e-123 F-box family protein (.1.2) Lus10010607 [exp] 110 / 1e-30 AT3G12350 72 / 4e-16 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117900 [exp] 302 / 5e-101 AT3G12350 374 / 7e-127 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007749 pacid=23149251 polypeptide=Lus10007749 locus=Lus10007749.g ID=Lus10007749.BGIv1.0 annot-version=v1.0 ATGGGGGTATCGCCGGAGGGTCAGATTGCGAACTACCTCGACCCGGAAGGGTATACCAGAATTCCCGGCGAATTAGGGTTACCAGAGACGGACTTGGTTC CTGTCAATGTGAGTTTCATTGGAAGTCTCCATTTTAGCTTGGAGGAGGATAAGAGTTTTGGTGTAGTGAATAATGGGTCTCCTCCTCTGGCGAGCTTGCC TGAAATGGTGGAGATGTACCAGTACTACGCGAATCGGTCGAGTCCTGGTGTGGATCGGTCGTTGAGGAGGCAGAAGAGGAGGGAGAAGGAGAGGCTGTTT AGGAAGAGATGGGAGACTGAGGATTATTTGAAGATTGTTGATTGCTCGCCCACGCCTGGCCGCCTGTTGCAGGGGCTATGGAAGGGAATTTGTGATGAAA TGAAGTTAGAGTTTTATTTGGTGGAATATGATGGTACTGGTATCTCATGTAGAAGGCTAGGGGACTTATCTGATCGTCTCTCTAGTTGTATGCCAGTGTT TTGGACATCAAATCCAACATTCATTGATTCTCCACTTTCACCTGAGGAGCTGCATCTATACGACAGTCAGATACATATTCGACTATCTCCCGATCATAAT TGTGCGGATGATGAGATTGTTTTGCGTGTCATGTACATCAACTCAAGTTTCGATTTGGTAATTCCTGGCTTCGAAGGAGCTGAAGCAAATACTTGGCGAG TTGAGGGAAGGATTTGGCAGTACAAGAGTGGAACGTTCGGGTTTGGCTTTCTTCGTGACAATTTCATTGTAGATCTAAAGCCAATTGCCCAAAATTGTTG TCTTCTTGATACCTTGGATCTGTGTAGTGATTGA
AA sequence Show only first row Show all	>Lus10007749 pacid=23149251 polypeptide=Lus10007749 locus=Lus10007749.g ID=Lus10007749.BGIv1.0 annot-version=v1.0 MGVSPEGQIANYLDPEGYTRIPGELGLPETDLVPVNVSFIGSLHFSLEEDKSFGVVNNGSPPLASLPEMVEMYQYYANRSSPGVDRSLRRQKRREKERLF RKRWETEDYLKIVDCSPTPGRLLQGLWKGICDEMKLEFYLVEYDGTGISCRRLGDLSDRLSSCMPVFWTSNPTFIDSPLSPEELHLYDSQIHIRLSPDHN CADDEIVLRVMYINSSFDLVIPGFEGAEANTWRVEGRIWQYKSGTFGFGFLRDNFIVDLKPIAQNCCLLDTLDLCSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12350			F-box family protein (.1.2)		Lus10007749 [exp]	0	1
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	11.4	0.8174
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	13.6	0.8406
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	14.7	0.8077
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	14.8	0.8428
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	16.7	0.8356
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	22.6	0.8463
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Lus10000776 [exp]	23.5	0.8152
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	33.7	0.8179
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	38.0	0.8089
AT5G35080			unknown protein		Lus10039972 [exp]	38.4	0.8161

Compare expression of checked genes

Lus10007749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.