Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018673 [exp] 137 / 2e-39 AT3G12350 365 / 1e-123 F-box family protein (.1.2) Lus10010606 [exp] 55 / 3e-10 AT3G12350 106 / 6e-29 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117900 [exp] 58 / 2e-10 AT3G12350 374 / 7e-127 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007750 pacid=23149246 polypeptide=Lus10007750 locus=Lus10007750.g ID=Lus10007750.BGIv1.0 annot-version=v1.0 ATGAAAAGAAATGGCGACTTGAGGTACCGTTTTGAGTGGGAGAGACTCAGGAACCACGAAGGAAAGAGGCCCCTGTTAGAATTAGGGAATTGCAAAAACT CTCAATCCTCTCCTATACAAAAAGCTCCCACCCCCCCACGCGAAGAAGACAAGAGACGGCGGTTTTGCCACTCCGGCGGCGGAGGAGTTGATTTTCTGCT GGGTTTGGCCGCAGCGACGCTAGAAGCCGATGAAACTCTCCCATTTGTTCAGGGTCTTGTAGAGGAAGTTGAAGGAGATGTTGCCACTCCCCCAATTTCT GATCTGGGTCTTGGAGCCCCACCGCCTGTCGCAGAGAGCGTACCAGAGCTTGCTGTCGGTGTGGCAAAGTGGGGCGAATCGCTTGGAAGTGCAGGAGAAA TTGGCGATGATATCGGTCGGGGAAAGAAATGA
AA sequence Show only first row Show all	>Lus10007750 pacid=23149246 polypeptide=Lus10007750 locus=Lus10007750.g ID=Lus10007750.BGIv1.0 annot-version=v1.0 MKRNGDLRYRFEWERLRNHEGKRPLLELGNCKNSQSSPIQKAPTPPREEDKRRRFCHSGGGGVDFLLGLAAATLEADETLPFVQGLVEEVEGDVATPPIS DLGLGAPPPVAESVPELAVGVAKWGESLGSAGEIGDDIGRGKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007750 [exp]	0	1
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	2.0	0.9061
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	8.9	0.9002
					Lus10040954 [exp]	9.1	0.9019
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	10.7	0.8967
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	11.7	0.9004
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027354 [exp]	12.0	0.8554
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	13.7	0.8883
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	14.3	0.8876
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	17.7	0.8893
					Lus10021668 [exp]	18.5	0.8509

Compare expression of checked genes

Lus10007750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.