Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 229 / 2e-65 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 171 / 5e-45 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G52340 157 / 3e-40 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 150 / 1e-38 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT1G54090 136 / 3e-33 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G52350 134 / 7e-33 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT3G14090 129 / 4e-31 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G50380 124 / 3e-29 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 122 / 1e-28 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G58430 116 / 8e-27 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018672 [exp] 1289 / 0 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1) Lus10014917 [exp] 1004 / 0 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1) Lus10027347 [exp] 1002 / 0 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10026230 [exp] 240 / 3e-69 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10042439 [exp] 236 / 8e-68 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10037329 [exp] 159 / 6e-41 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 155 / 1e-39 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10043432 [exp] 142 / 3e-35 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10035146 [exp] 121 / 3e-28 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015500 [exp] 932 / 0 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.006G272900 [exp] 229 / 2e-65 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 215 / 2e-60 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.010G250500 [exp] 199 / 2e-54 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 175 / 3e-46 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.016G071000 [exp] 164 / 1e-42 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.006G203900 [exp] 156 / 5e-40 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.008G017800 [exp] 149 / 1e-37 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 146 / 1e-36 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.013G152900 [exp] 133 / 3e-32 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10007751 pacid=23149238 polypeptide=Lus10007751 locus=Lus10007751.g ID=Lus10007751.BGIv1.0 annot-version=v1.0 ATGACGATCGACGTAGACCAATCATGTGTCGCCAATCTTGCGTCAACATGTTCCGATCTGCGGACGCTCATCCAGACGTCGTCCAAGATGGAAGACATCC TCCGTAAGATGGACAACCGGTTCGAAGTGATGGACGACAACCTGGCCACCACCGCCAGGAGAATCGCTCCGCTTCAATCTCTAGCCATGGCCTCCAAGGC TCTCGACACTAGAATCAATCGAGCAGTCTCCCCTGCTTTTGCTCTTCTCGACGGGTTCAAGCGCTCCGAGTCGCTCCAGAAGAAGCTCATCCATCTATCC GGGAAACTGGAGGCGGAGAGGAAATCCAAGAAGCGGATGGGGCTCTTGCTCAAGTACGTAGATCACGTCCACCAGCTGAGTTCGGCGATCGATTCGATTG TCCAGGATGGGGAGCCGGCGATCCAGAAGCTGCAGGAAGTTGTAGAGTTTCTGAGCAGGACCAAGGCCACCGATCATTTTCGGACGCATAGGCTGAGGGA GACTTTAGTCACACTGAAGGCGCTCTACGAGAATGAGGTGGACGCGATGAAGTTCGAAGGGTTTCTGGATCAAGCGCTGCTGAATTTGCAGGATGAATAC GAGCAGATACTTCAGCAGCTCAAGCATCAGAATTTGGGGGTTTTACGAGGTCAAGATGATGATGACGAAGACGATGATGTTGCCTTGTCTTCTGATCTTG GTACTGATCTTGAACTTGAAATCCTGAAGCGGATTTCCGAAATCCTCTGTTCTAACGATTGTTTGGATATCTGCATCGACATCTTCGTCAAGGTAAGGTA CAGAAGAGCGGCCAAAGCGTTGATGAAGTTGAATCCGGACTATCTGAGAACGTACACGCCGGAAGAGATCGACGAAATCGAGTGGGAGGCTCTGGAAACA GCAATAAGCCATTGGATACAGCATTTCGAGCTAGCTTTGAAAACAGTTTTCATATCGGAAAAGAAGCTGAGCCACCGAGTTCTGGAAGGGATATTGGACG GAGCCGTGTGGCTGGAATGGTTCATCAAGATTGCCGACAAAATCATGGCGGTTTTCTTCCGATTCGGAGAAGGCGTAGCCAGGAGCAGCAAAGAGCCGCA GAAGCTGTTCAAGCTTCTAGACATGTTCGATTCCTTGGAGAAGCTTAAATCAGAGTTCACAGCCATTTTTGAAGGGGAAGCTGGGTTGGACATCTGTTCC AGATACAGAGAACTGGAAAAGCTACTCGTCCATTCATCAAGCAAAGTTTTCTGGGAATTCGGTCTTCAAATTGAAGGGAACTCTGACGGGTTTCCTCCGC CGCAAGATGGATCGGTATCAAAACTTGTTAGGTACGCAATTAACTATCTCAAATACCTAGCCACCGAAAGTTACAGTGTTCCCATGGCGAAAGTTCTCCG AACGGAACAGATTTGGAAAGCAGGGATACTATCAAAACCAGATTCGGACGAGAATTTGCTCAAGGAAGCTGTTACAAACATTTTGGAAGCTCTGCAACGG AATATCGAATCGAAGAGATCTAGGTACAAAGATAAAGTACTCCCGCACATCTTCGCCATGAACACTTACTGGTACATTTACATGAGAACGCGAAACACAG AGCTCGGGAAGTTGTTGGGGGAGCAATACATGAAGCAGAAATACAAATCGGTGGCGGAAGAATCGGCTTATTTATACCAGAAGCAAGCTTGGGGCCCGTT GGTAAGGTTGTTGGAGGCGGATGATATAAAGAGGAGCCAAGGAAACCTGCAGCAAGATTCGGGCGCCGCCGTGAGGGCAAAGGTGGAAGTGTTTCTCAAG GCGCTAGAGGCGATATCGGAGCGACACAGGTCATCGTACACGATTCCTGACGCCGTTCTGAGGGAGCAAATCCGTGGAGCGACTGTGAAGGTCGTCGTTC CGGCCTACACGGATTTCCTTAACAACTATCAACGGGCTTCGCAGGTAAAGAACTTCCCTAGCCCGGATTCGATTCAGGCGATGGTTGGTCGGGTTTTTAA CTCTGGAGAGCATTACCCGGCGGCCGGAGAAGGGAAGTCGTGGCGCAGGGAGTCTAAAGATCGGTCTGGGGCGGCGGGGAGCTCGGTCGGGTCCGTGGAT TACGAAGGACAGGGGTTTCGACGGTCAAGATCGATTCGATCGTCTGCCAGCGATCACGTGGACGGCTGA
AA sequence Show only first row Show all	>Lus10007751 pacid=23149238 polypeptide=Lus10007751 locus=Lus10007751.g ID=Lus10007751.BGIv1.0 annot-version=v1.0 MTIDVDQSCVANLASTCSDLRTLIQTSSKMEDILRKMDNRFEVMDDNLATTARRIAPLQSLAMASKALDTRINRAVSPAFALLDGFKRSESLQKKLIHLS GKLEAERKSKKRMGLLLKYVDHVHQLSSAIDSIVQDGEPAIQKLQEVVEFLSRTKATDHFRTHRLRETLVTLKALYENEVDAMKFEGFLDQALLNLQDEY EQILQQLKHQNLGVLRGQDDDDEDDDVALSSDLGTDLELEILKRISEILCSNDCLDICIDIFVKVRYRRAAKALMKLNPDYLRTYTPEEIDEIEWEALET AISHWIQHFELALKTVFISEKKLSHRVLEGILDGAVWLEWFIKIADKIMAVFFRFGEGVARSSKEPQKLFKLLDMFDSLEKLKSEFTAIFEGEAGLDICS RYRELEKLLVHSSSKVFWEFGLQIEGNSDGFPPPQDGSVSKLVRYAINYLKYLATESYSVPMAKVLRTEQIWKAGILSKPDSDENLLKEAVTNILEALQR NIESKRSRYKDKVLPHIFAMNTYWYIYMRTRNTELGKLLGEQYMKQKYKSVAEESAYLYQKQAWGPLVRLLEADDIKRSQGNLQQDSGAAVRAKVEVFLK ALEAISERHRSSYTIPDAVLREQIRGATVKVVVPAYTDFLNNYQRASQVKNFPSPDSIQAMVGRVFNSGEHYPAAGEGKSWRRESKDRSGAAGSSVGSVD YEGQGFRRSRSIRSSASDHVDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10007751 [exp]	0	1
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10035967 [exp]	30.1	0.7910
AT2G46150			Late embryogenesis abundant (L...		Lus10007904 [exp]	44.8	0.8371
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10021422 [exp]	74.5	0.8154
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	88.2	0.8208
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10015554 [exp]	105.1	0.7953
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	107.1	0.7670
AT1G60010			unknown protein		Lus10030651 [exp]	110.5	0.7699
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10003055 [exp]	114.3	0.8010
AT5G02640			unknown protein		Lus10038485 [exp]	115.9	0.7957
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	117.5	0.8065

Compare expression of checked genes

Lus10007751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.