Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27461 267 / 3e-87 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018671 [exp] 644 / 0 AT1G27461 306 / 1e-102 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117700 [exp] 352 / 1e-120 AT1G27461 273 / 2e-89 unknown protein Potri.014G015300 [exp] 331 / 3e-112 AT1G27461 258 / 9e-84 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007752 pacid=23149267 polypeptide=Lus10007752 locus=Lus10007752.g ID=Lus10007752.BGIv1.0 annot-version=v1.0 ATGATCAAGACATTGACTCCTTACTCAAACACAGCCAAAACGGCTGAGATCATGTCTAGGTACAGGCCAATTGCTCCAAAGCCCGACTGCCCTTCCAATT CCGAGGATGAGAATTCCTCCATGTCTCAGAAAATCAGACAATCTCCTTACCTGAGGAATCTGTGGCCACAATTGCAAGCCAGGCCAACAAGAACCAGGAA GAGGGGCAGAGGAGCTTTATCTCCACCTGTTGTCAAAAGGCTCAGGACCCATCAAATGTTTTCCATTTCCCCGCCGGCTGAGCACCTCGGCATGCAGGGT TTTTACCCTACTGGGTTTTCTCAGCTTCCTACTGTCCAAAATCCGGGTGCAATTCAGAGCAATTCAGTGATTGCCTCGCCTTCTAGCCTGGTCACTCTTC CTCTTCTTTCTCCATCAGCCGCATTCCAGGGAATGCAGCCTCATGAGCTTATGAGATGCATGGCACCAAGTCAAGAGAGGGACATAGATTTGAACACTGT TGTCGAAATCCCGGAGGAGAAGGATCTGTTGCGGCAACTTCAGGAACGGCACGCTACTACTACCAACGTTGTTATAGCACCGCAGCCTGTCCGTCCTGTG GTCTCAACCATAAGAGTTGGCTGCATCAATGAAACCCCAGGTGTCCCACCGGTTCAGTATCAGAAAAAGCCAGAGCAGGTTGAGGAAGAGGTGGAGTCCG ATGTCCTGCCTGCGGTAATATCAGATTCGAACAACAAAGTGAGGCTGGCGAATTCGGCATACAAGGAAATGGTTGGTCAACCAGAGTGTTCGTGGCTCAA TTTAATGGTGACGGGGAATGACCGACTGGGATTCGGCAGCTCGTGCTGTCAAAGGATATCTGGAGAAGTGGCCCTACACCTTTCCGATTCAAAGGTGCCC GTTTCATCAAACGGGTTTTCATGCTGGGTGAGTATTGAATGGGGAAGCCAAGGGAAGAAGAGTTCTGTCAATGCCTTTTGCGATGTCATCAGATTGTCCT GCAAATCCAAGGATTATCTCTTCACATGGAGGTTTCACACACCTGCCAGACAAGGTTCCCAAATCAGCAGCAATGTTTAG
AA sequence Show only first row Show all	>Lus10007752 pacid=23149267 polypeptide=Lus10007752 locus=Lus10007752.g ID=Lus10007752.BGIv1.0 annot-version=v1.0 MIKTLTPYSNTAKTAEIMSRYRPIAPKPDCPSNSEDENSSMSQKIRQSPYLRNLWPQLQARPTRTRKRGRGALSPPVVKRLRTHQMFSISPPAEHLGMQG FYPTGFSQLPTVQNPGAIQSNSVIASPSSLVTLPLLSPSAAFQGMQPHELMRCMAPSQERDIDLNTVVEIPEEKDLLRQLQERHATTTNVVIAPQPVRPV VSTIRVGCINETPGVPPVQYQKKPEQVEEEVESDVLPAVISDSNNKVRLANSAYKEMVGQPECSWLNLMVTGNDRLGFGSSCCQRISGEVALHLSDSKVP VSSNGFSCWVSIEWGSQGKKSSVNAFCDVIRLSCKSKDYLFTWRFHTPARQGSQISSNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27461			unknown protein		Lus10007752 [exp]	0	1
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	7.6	0.7683
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	14.4	0.7636
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	19.1	0.7461
					Lus10001550 [exp]	21.9	0.7119
					Lus10007187 [exp]	25.7	0.6983
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	31.5	0.7306
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	35.2	0.7335
					Lus10030678 [exp]	36.0	0.6862
AT5G04980			DNAse I-like superfamily prote...		Lus10028884 [exp]	42.1	0.7318
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	42.9	0.7282

Compare expression of checked genes

Lus10007752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.