Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27752 763 / 0 Ubiquitin system component Cue protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018693 [exp] 1541 / 0 AT1G27752 788 / 0.0 Ubiquitin system component Cue protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016900 [exp] 924 / 0 AT1G27752 705 / 0.0 Ubiquitin system component Cue protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10007753 pacid=23149225 polypeptide=Lus10007753 locus=Lus10007753.g ID=Lus10007753.BGIv1.0 annot-version=v1.0 ATGTCGCGACGTTTCTCTTCCGCCGGCGGGGGGCGGAGCACCACCCCACGGGGCCCCAAGCGCACCTGCCCCGCCCACACTGCCACGGCCAACAACATAG GCCACAACCATCAGTACGGCAATCGGAATTACGCTCCAAAATCGCAGAAGAAATTCGTTCCAAAGCAGCAAAACCCTATCAACCCTACACTCTCCACTTC CCTACGGAAATCCGATGTTCCTTCTCCTCCTCCTCCTTCTTCTCCTTCATCCAGCTCCCGTGCTGCGGGCGATTCCACCAGTAGGATCCGGATGGGTGAC AGCGGAGAATGGGTTTCTAATAGAGCAATCGTTAGGACTACGACTGCTGCCGTTGGAAAATTTGTCAACTATTTGCCCCAGGACGAGGGAGTAGCCACAG GGCTCGTGGCGGAGGAAGGCGGGCTTGATGCTGTGGAGTCCCAGAGGGTTGTTGATCTATTGAACAGAGAACTCTCCCGATTGCTTAAGCTGAGCCCCAG AGAGTTCTGGAAGGAAGTGGCCAAGGACGAATCGTTGCATGAATTTCTGGATAGCTTCCTAAAGTTTAGGAGCAGATGGTATGATTTCCCATATCGTGGA GCCAAGGAAATTGTTGCTGGGGTCATTGTTGGAGATCTTGAATTATCTCGACGTGTTTTCATGGTGTTGTATCGCATGTCCTCTAATAGGGATCCTGGTG CTAGGTCTGCTGACAGTCTCAGCTCAAAAGACCATTCAGTCATAATGCAGGAGAAGAAGTTGCTTGATTTGGCTAAGTTACTTGATATCTGTGGGATATA TGGTCATGAGAATGAAGAATTGACTCGAATCCTAGTGAGAAATGCTTTAAATTCCCAGCCTGGGATGCAAAATAATCTGACTGCTGTGATGTCACATTTC CTGGGCATTGTCCAAACAATGTACCAACGCTGCATTTCATCTTTGGAGGTTTTATTTTCATCTACAAGCCCTCAAGAGGTCCGGTCCAGCCAGCTTCGTG ATGATTTCTTGGAGGTGATGGACTTCATAAATGATGCAATTGTCTCTATGGATACATTGGTTGCTATGTATAAACCAGCAGCCTTGTTCTTTTCATTGCC TGTGCAAATGAGTGATGGATATGGCGAGTTGTTAGTCACTCTTGCAAGATTGCATGATAATCTCATCCCCTCTTTTCAGCGAGGGTTCAGGATGATGTTT TCTCAGCAAGGAGATGCTGGGATGATATCAAATGTTGCTATTAGCTTAAAGATGTTATCACTTAGAATTGCTACATTTGGTTGGAAAATACTGGACTACT GCTATTTAAGCGAAGAACTTGTTGAAGATATGTCAACCATTCCAGAAGTCACACAGATGTTTCCTGCGAAACTTGAGGATCCGATGATAAGAGCAGAGAT ATTGGTTCAAACATTCCGGGAGATCAATGCGATCTCACTTTCTGTTCAGGAAAATCATCCTTATAACACATTTCTAAAGAACATTGACCAGAACTTCCAT ATCATGGCCAAACTTGACGTCTTGCAGAACACTGGATGGATATTCTTGGACGACGAGAACCTCCAATACTTATCTGGGATAATGATGTCTACTCCCAAGA GCACTGTTAAAGATTTGCCACTTCTGCTACAATCCGGTCAGGAAAACAAAGTGTTGATGGATGAAGGCACAGCTTTCTTGGAGTCAAAGATCAGTCAGAT AAAGGACCTCTTTCCTGATTATGGTAAAGGGTTCTTAGCTGCCTGCCTTGAAGCTTATAACCAAAATCCCGAAGAAGTCATTCAGAGAATACTGGAAGGG ACTCTTCATGAAGATCTACAGCGTTTGGACATTTCGTTAGAGACGTTACCAGCACGGAAGAATGATCAAACTGCAAGCAGAAAAGATAAGGGTAAAGGGA AATTGGATGAGAGTACGTCTCTTCCTCCAATACAACCCAATCATTCTAGTAAACCGGTGTGGGTGGAGCAAACAATTAAGGCCCCGCCTGCTTCATCTTC GTCCACAGTAGGGAGGTTTGTTAGAAAGTCAGATAACTTGGATGAAAACATTCTCGATAGCAGAGATGACAAGGATATAGCAAGAAACTACGCACTGGCA GTGCAGTTAGAGTATGATGATGAATATGACGACTCCTTTGACGACCTGGGCTTGACCGTAGCGGAGACGGGACTAGAAGGAAATGAGACATTCAGCGAAA GAATTAGGTCCGGTTCGAGCAATTTGTCAGCTGCTGAAACAGCTAGCTCTGGTCGAGGCCCGTCGGACTCAAAGTGGGGATCGAGGAAGAAGCCACAATT TTACGTGAAGGACGGTAAAAACTACAGTTACAAGGTAGAAGGTTCGATTGGAGTTGCAAATAGGGAAGAAGCTCAACTGATGACACAAGTGCATGGAGAG CAAATCCATGGTCTTGGGCGGGGTGGTAACATTCCCATGGGTGCAGCCAGGAAGTTGACTGACTACCAAGAGCAGCAAGAAGGGCAGTCGAATGAACCTG AGATGGAGAGAAGAGAGAACAATACCCGAGGGTTTAGGGGTAGAGGAATGAGAGGTGGCGGAATTGGAAGGTCCAATCAGTCCCAAGAACAGAAGACTCA GCCATCCGATGGTTCGGAGATGGAAGGAACGGCGGGGAATCCAGGAAACATGAGAGGGAGAGGCAGAGGCAGGGGACGAGGGAGGGGAGGGGCGGATAAC CACCATAGGAAGAATAGAGCGATCCGTAAGCATATGGCTGGCTTCTCCGGATGA
AA sequence Show only first row Show all	>Lus10007753 pacid=23149225 polypeptide=Lus10007753 locus=Lus10007753.g ID=Lus10007753.BGIv1.0 annot-version=v1.0 MSRRFSSAGGGRSTTPRGPKRTCPAHTATANNIGHNHQYGNRNYAPKSQKKFVPKQQNPINPTLSTSLRKSDVPSPPPPSSPSSSSRAAGDSTSRIRMGD SGEWVSNRAIVRTTTAAVGKFVNYLPQDEGVATGLVAEEGGLDAVESQRVVDLLNRELSRLLKLSPREFWKEVAKDESLHEFLDSFLKFRSRWYDFPYRG AKEIVAGVIVGDLELSRRVFMVLYRMSSNRDPGARSADSLSSKDHSVIMQEKKLLDLAKLLDICGIYGHENEELTRILVRNALNSQPGMQNNLTAVMSHF LGIVQTMYQRCISSLEVLFSSTSPQEVRSSQLRDDFLEVMDFINDAIVSMDTLVAMYKPAALFFSLPVQMSDGYGELLVTLARLHDNLIPSFQRGFRMMF SQQGDAGMISNVAISLKMLSLRIATFGWKILDYCYLSEELVEDMSTIPEVTQMFPAKLEDPMIRAEILVQTFREINAISLSVQENHPYNTFLKNIDQNFH IMAKLDVLQNTGWIFLDDENLQYLSGIMMSTPKSTVKDLPLLLQSGQENKVLMDEGTAFLESKISQIKDLFPDYGKGFLAACLEAYNQNPEEVIQRILEG TLHEDLQRLDISLETLPARKNDQTASRKDKGKGKLDESTSLPPIQPNHSSKPVWVEQTIKAPPASSSSTVGRFVRKSDNLDENILDSRDDKDIARNYALA VQLEYDDEYDDSFDDLGLTVAETGLEGNETFSERIRSGSSNLSAAETASSGRGPSDSKWGSRKKPQFYVKDGKNYSYKVEGSIGVANREEAQLMTQVHGE QIHGLGRGGNIPMGAARKLTDYQEQQEGQSNEPEMERRENNTRGFRGRGMRGGGIGRSNQSQEQKTQPSDGSEMEGTAGNPGNMRGRGRGRGRGRGGADN HHRKNRAIRKHMAGFSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27752			Ubiquitin system component Cue...		Lus10007753 [exp]	0	1
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	11.8	0.9066
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	13.0	0.9201
AT2G20320			DENN (AEX-3) domain-containing...		Lus10000499 [exp]	13.6	0.9095
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10000115 [exp]	19.1	0.8732
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10024468 [exp]	21.9	0.8957
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	44.2	0.9040
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	110.2	0.8683
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	190.8	0.8766
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	268.5	0.8650

Compare expression of checked genes

Lus10007753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.