Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30950 503 / 2e-177 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT5G15710 106 / 8e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 100 / 1e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 85 / 8e-18 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G33160 57 / 9e-09 F-box family protein (.1) AT5G43190 50 / 2e-06 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018690 [exp] 763 / 0 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10015775 [exp] 108 / 2e-25 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 107 / 3e-25 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 107 / 5e-25 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 107 / 5e-25 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 89 / 2e-19 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003029 [exp] 80 / 6e-16 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 72 / 3e-13 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007740 [exp] 45 / 7e-05 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160900 [exp] 576 / 0 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G074100 [exp] 567 / 0 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 123 / 8e-31 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 114 / 1e-27 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 114 / 2e-27 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 107 / 3e-25 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 87 / 2e-18 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 83 / 4e-17 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G062000 [exp] 82 / 8e-17 AT1G27340 83 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 81 / 2e-16 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007755 pacid=23149266 polypeptide=Lus10007755 locus=Lus10007755.g ID=Lus10007755.BGIv1.0 annot-version=v1.0 ATGGAGGCTGCTTTCAACACCTCCTCCTCGACCCCTCTGTCTTTCTCCTACACTTTCGCCGCCGCCGCAGCCGCCATTGGCGCCCAGATAACCACCACCA ACAACAACCCATGGATGGATACCAGAATCTGGAGCAAACTCCCCACTAAACTCCTCGACCGCGTCATCGCTTTCCTTCCTCCGCCGGCCTTCTTCCGTTC ACGCTGTGTCTGCAAGCGCTGGTACTCCCTCCTCTTCTCCACCTCCTTCCTCCATCTCTACATCCACCTCTCCCCTCCCCGCCACTGCTTCCTCTTCTTC AAACAAAAACCCACCACCTCCTTCATCTACAACAACAACCATAACAACCAAACTCATCATCAAAACCACGGTGAAGGCTACCTCTTCGACCCCTACGAAC TCCTCTGGCACCGAATCTCCTTCTCCCTCATCCCACCAGGATTCTCCCCCGCCGCTTCCTCCGGCGGCTTACTCTGCTGGATCTCCGACGAAGCCGGCCC CAAAACCCTCTTCCTCTCAAACCCATTAACCAACTCCGTCTCTCAACTCCCACAAACCCTCCGTCCACGTCTCTTCCCTTCCACCGGACTCTCTGTGGGA CCCTCTTCCATCCACGTGGCGGTAGCCGGTGACGACCTCATCTCACCTTACGCCGTAAAAAACATCTCAACAGAATCCTTCCACGTGGACTCCGCGGGGT TCTACTCCCTATGGGGGACCACATCACAACTCCCGAGGCTGTGCAGCCTGGAGACAGCTGGACAGATGGTCAGCGTCAGCCAAGGGAGGTACCTCTACTC GATGAACCACAGCCCCTTCAGCGTACTGGGACACGACGTCGTATCGAACTCGTGGTTCAAAATCCAAGCTCCCATGCGGCGGTTCCTCCGCTCGCCTTCT CTGGTGGAGAGCGGAGGCAGGGTCGTGCTGGTGGCGGCGGTGGAGAAGAGCAAGCTGAATGTTCCCAGGAGTTTGAGGATGTGGAGCCTGCAAGGAGCTG CCACGTGGGTGGAGATAGAGAGGATGCCGCAGCAGCTGTACGTGCAGTTCACGGAGGTGGAAGGAGGGCGTGGGTTTGAGTGCGTGGGGCATGGGGAGTT TGTTGTGATTATGATAAGGAAGAGTGGGAATCGAGGGCTGCTGTTTGATATGTGGAGGAAGGTGTGGCAGTGGATTCCGTTGTGTCCTTACGTTGACTAT CAACAGCAGCATGATGACTTGCGTGGGTTTGCTTATGACCCTCGCCTTGCTACGCCCGTTACTGGGCTGCTTGATCAGCTCACCCTTCCTAATTTCACTT CCTTTAATTAA
AA sequence Show only first row Show all	>Lus10007755 pacid=23149266 polypeptide=Lus10007755 locus=Lus10007755.g ID=Lus10007755.BGIv1.0 annot-version=v1.0 MEAAFNTSSSTPLSFSYTFAAAAAAIGAQITTTNNNPWMDTRIWSKLPTKLLDRVIAFLPPPAFFRSRCVCKRWYSLLFSTSFLHLYIHLSPPRHCFLFF KQKPTTSFIYNNNHNNQTHHQNHGEGYLFDPYELLWHRISFSLIPPGFSPAASSGGLLCWISDEAGPKTLFLSNPLTNSVSQLPQTLRPRLFPSTGLSVG PSSIHVAVAGDDLISPYAVKNISTESFHVDSAGFYSLWGTTSQLPRLCSLETAGQMVSVSQGRYLYSMNHSPFSVLGHDVVSNSWFKIQAPMRRFLRSPS LVESGGRVVLVAAVEKSKLNVPRSLRMWSLQGAATWVEIERMPQQLYVQFTEVEGGRGFECVGHGEFVVIMIRKSGNRGLLFDMWRKVWQWIPLCPYVDY QQQHDDLRGFAYDPRLATPVTGLLDQLTLPNFTSFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10007755 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	1.4	0.8648
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032040 [exp]	2.0	0.8587
					Lus10002962 [exp]	3.9	0.7008
AT5G10310			unknown protein		Lus10035922 [exp]	12.8	0.7005
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	18.5	0.6949
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	23.9	0.6795
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008713 [exp]	24.9	0.6286
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10002824 [exp]	34.6	0.6850
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	41.9	0.6821
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	43.2	0.6929

Compare expression of checked genes

Lus10007755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.