Plant FIBer expression Database

Lus10007756 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27750 83 / 9e-18 nucleic acid binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018694
[exp]
285 / 1e-88 AT1G27750 516 / 2e-163 nucleic acid binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G017000
[exp]
154 / 2e-42 AT1G27750 609 / 0.0 nucleic acid binding (.1)
PFAM info
Representative CDS sequence
>Lus10007756 pacid=23149232 polypeptide=Lus10007756 locus=Lus10007756.g ID=Lus10007756.BGIv1.0 annot-version=v1.0
ATGGCTCTGGTGACGAGAATCCTGTTTCAGCTGCGGGCTTCAGTTCCCCTGCCTTACGATCGGAACCTGGCGGATTTTCTAACACTTCTAATTCTCCCAG
ACAGAATCTTGGGGCACCTTATGGTTGCCAATCTATTTGGTTCTGTTATGGAGATCCTAGTACTATGGAAGTTTTTTCTGCTTCCAGGGAGCTGTGGGTT
GGCTTTTTTAGTAGTCTTGACGTATCTGAAACTCATTGAAGGTTGCAGTCATGAGAGTGGATCATTGAGGTCCATGGATTGGAAGACTATTGAACCCGGA
GGTTCTTCACATGTAATGTCTTCAATGCCCAGGGATGTAATGAACCAACCCGTGCTTTCACCTGTTACGAGAAGACCTGTAAGCTTACGGAATAATTCAT
TTGAGGCCAGAAGCCACAATGGCTCTGGTGACGAGAATCCTGTTTCAGCTGCGGGCTTCAGTTCCCCTGCCTTACGATCGGAACCTGGCGGATTTTCTAA
CACTTCTAATTCTCCCAGACAAAATCTTGGGGCACCTTATGGTTGCCAATCTATTTGGTTCTGTGATGGAGATCCTAGTACTATGGAAATTTTTTCTGCT
TCCAGGGAGCTGTGGGTTGGCTTTTTTAGTCCTGATGTATCTGAAGCTCATTTAAGGTTCAACCAGTTTAATGTATTGCACCGGTCATCTGACTACTTGA
CCATTTCAATAGATTCGGCTTGTCAGTACGTTACGATTTTTGAAACCCTTAGATTGACATGA
AA sequence
>Lus10007756 pacid=23149232 polypeptide=Lus10007756 locus=Lus10007756.g ID=Lus10007756.BGIv1.0 annot-version=v1.0
MALVTRILFQLRASVPLPYDRNLADFLTLLILPDRILGHLMVANLFGSVMEILVLWKFFLLPGSCGLAFLVVLTYLKLIEGCSHESGSLRSMDWKTIEPG
GSSHVMSSMPRDVMNQPVLSPVTRRPVSLRNNSFEARSHNGSGDENPVSAAGFSSPALRSEPGGFSNTSNSPRQNLGAPYGCQSIWFCDGDPSTMEIFSA
SRELWVGFFSPDVSEAHLRFNQFNVLHRSSDYLTISIDSACQYVTIFETLRLT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27750 nucleic acid binding (.1) Lus10007756
[exp]
0 1
AT4G18950 Integrin-linked protein kinase... Lus10002765
[exp]
2.2 0.7670
Lus10033844
[exp]
2.8 0.7954
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Lus10007142
[exp]
3.5 0.8039
AT1G21750 ATPDI5, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Lus10015305
[exp]
11.0 0.7386
Lus10042801
[exp]
14.1 0.7806
AT3G51480 ATGLR3.6 glutamate receptor 3.6 (.1) Lus10035980
[exp]
14.5 0.7444
AT4G38350 Patched family protein (.1.2) Lus10016019
[exp]
14.9 0.7378
AT1G60990 Glycine cleavage T-protein fam... Lus10020818
[exp]
16.2 0.7472
AT4G17140 pleckstrin homology (PH) domai... Lus10006816
[exp]
17.0 0.7584
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Lus10041344
[exp]
24.5 0.7173

Lus10007756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.