Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27450 303 / 2e-106 APRT, ATAPT1, APT1 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) AT4G22570 290 / 2e-101 APT3 adenine phosphoribosyl transferase 3 (.1) AT4G12440 283 / 1e-98 APT4 adenine phosphoribosyl transferase 4 (.1.2) AT5G11160 256 / 4e-88 APT5 adenine phosphoribosyltransferase 5 (.1) AT1G80050 249 / 3e-85 PHT1.1, ATAPT2, APT2 adenine phosphoribosyl transferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018695 [exp] 373 / 3e-134 AT1G27450 303 / 9e-107 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Lus10024612 [exp] 300 / 4e-105 AT4G22570 305 / 2e-107 adenine phosphoribosyl transferase 3 (.1) Lus10032249 [exp] 296 / 1e-103 AT4G12440 299 / 4e-105 adenine phosphoribosyl transferase 4 (.1.2) Lus10004344 [exp] 287 / 3e-100 AT4G22570 301 / 4e-106 adenine phosphoribosyl transferase 3 (.1) Lus10002924 [exp] 257 / 4e-88 AT5G11160 316 / 3e-111 adenine phosphoribosyltransferase 5 (.1) Lus10001497 [exp] 254 / 5e-87 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017200 [exp] 317 / 5e-111 AT1G27450 277 / 2e-94 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Potri.001G121400 [exp] 287 / 4e-100 AT4G22570 298 / 9e-105 adenine phosphoribosyl transferase 3 (.1) Potri.006G255900 [exp] 269 / 4e-93 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1) Potri.018G026200 [exp] 268 / 1e-92 AT5G11160 313 / 2e-110 adenine phosphoribosyltransferase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10007757 pacid=23149257 polypeptide=Lus10007757 locus=Lus10007757.g ID=Lus10007757.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTAACGACCACCAAGATCCTCGCCTTGCTGGAATCGCTTCCGCGATTCGAGTCATTCCAGACTTCCCCAAGCCGGGGATTATGTTTCAGG ATATCACTACTCTGCTTCTTGACGTCAAGGCTTTCAAGGACACTATCGATTTGTTCGTGGAGAGGTACAAAGACAAAGGCATCTCAGTCGTTGCTGGTAT TGAAGCAAGGGGTTTCATATTTGGCCCTCCGCTTGCATTGGCTATTGGAGCAAAATTTGTTCCATTGAGGAAGCCCAAAAAATTACCTGGGGAGGTTATA TCAGAAGAATACTCTCTGGAATATGGAACGGACAAGATTGAAATGCATGTAGGTGCTGTGCAAGCAGGTGAACGTGCACTGGTTGTAGATGATCTCATTG CAACTGGCGGGACCTTAAAGGCTGCAATCAATCTCCTAGAGCGTGTAGGGGTGGAAGTTTATGAGTGCGCTTGTCTCATTGAGTTGCCTGAGTTGAAGGG TCGCGATCGATTGGGAGACAAGCCGTTGTTTGTCCTGGTGACCTCTACCATCGAAGCACATGATTTCTAA
AA sequence Show only first row Show all	>Lus10007757 pacid=23149257 polypeptide=Lus10007757 locus=Lus10007757.g ID=Lus10007757.BGIv1.0 annot-version=v1.0 MAAANDHQDPRLAGIASAIRVIPDFPKPGIMFQDITTLLLDVKAFKDTIDLFVERYKDKGISVVAGIEARGFIFGPPLALAIGAKFVPLRKPKKLPGEVI SEEYSLEYGTDKIEMHVGAVQAGERALVVDDLIATGGTLKAAINLLERVGVEVYECACLIELPELKGRDRLGDKPLFVLVTSTIEAHDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10007757 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	2.2	0.9480
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	2.4	0.9456
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	3.5	0.9455
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	4.5	0.9447
AT1G50740			Transmembrane proteins 14C (.1...		Lus10008541 [exp]	4.9	0.9355
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	7.4	0.9293
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	10.0	0.9402
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	10.4	0.9187
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10041075 [exp]	10.8	0.9089
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	11.0	0.9129

Compare expression of checked genes

Lus10007757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.