Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49940 189 / 7e-60 AS2 LBD38 LOB domain-containing protein 38 (.1) AT5G67420 188 / 2e-59 AS2 ASL39, LBD37 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) AT4G37540 184 / 4e-58 AS2 LBD39 LOB domain-containing protein 39 (.1) AT1G67100 156 / 3e-47 AS2 LBD40 LOB domain-containing protein 40 (.1) AT3G02550 150 / 1e-44 AS2 LBD41 LOB domain-containing protein 41 (.1) AT1G68510 149 / 3e-44 AS2 LBD42 LOB domain-containing protein 42 (.1) AT1G07900 55 / 3e-09 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 54 / 2e-08 AS2 LBD11 LOB domain-containing protein 11 (.1) AT2G31310 50 / 2e-07 AS2 LBD14 LOB domain-containing protein 14 (.1) AT3G26660 45 / 3e-06 AS2 LBD24 LOB domain-containing protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018697 [exp] 331 / 2e-116 AT5G67420 190 / 9e-61 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Lus10019292 [exp] 189 / 2e-59 AT3G49940 259 / 8e-87 LOB domain-containing protein 38 (.1) Lus10011530 [exp] 189 / 3e-59 AT3G49940 260 / 2e-87 LOB domain-containing protein 38 (.1) Lus10028470 [exp] 145 / 2e-44 AT1G67100 205 / 2e-68 LOB domain-containing protein 40 (.1) Lus10018993 [exp] 55 / 3e-09 AT3G26660 134 / 2e-41 LOB domain-containing protein 24 (.1) Lus10033843 [exp] 53 / 1e-08 AT1G07900 143 / 8e-44 LOB domain-containing protein 1 (.1) Lus10011645 [exp] 54 / 2e-08 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10036130 [exp] 54 / 2e-08 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10040313 [exp] 51 / 5e-08 AT5G66870 133 / 5e-40 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017400 [exp] 227 / 3e-75 AT4G37540 196 / 4e-63 LOB domain-containing protein 39 (.1) Potri.002G119400 [exp] 221 / 9e-73 AT3G49940 198 / 5e-64 LOB domain-containing protein 38 (.1) Potri.005G145500 [exp] 191 / 1e-60 AT5G67420 244 / 2e-81 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Potri.007G053600 [exp] 187 / 3e-59 AT3G49940 263 / 3e-89 LOB domain-containing protein 38 (.1) Potri.001G295700 [exp] 183 / 3e-58 AT3G49940 186 / 2e-59 LOB domain-containing protein 38 (.1) Potri.009G089600 [exp] 179 / 2e-56 AT3G49940 195 / 7e-63 LOB domain-containing protein 38 (.1) Potri.008G120600 [exp] 152 / 2e-45 AT1G68510 228 / 3e-75 LOB domain-containing protein 42 (.1) Potri.017G114500 [exp] 153 / 4e-45 AT3G02550 291 / 5e-99 LOB domain-containing protein 41 (.1) Potri.004G100100 [exp] 152 / 6e-45 AT3G02550 277 / 2e-93 LOB domain-containing protein 41 (.1) Potri.010G125000 [exp] 147 / 2e-43 AT1G68510 220 / 2e-72 LOB domain-containing protein 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10007758 pacid=23149237 polypeptide=Lus10007758 locus=Lus10007758.g ID=Lus10007758.BGIv1.0 annot-version=v1.0 ATGAGCTGCAACGGTTGCAGAGTACTGAGGAAAGGATGTGGAGAGAATTGCGTGCTGAGGTCATCCCTCCGATGGATTCCCACTCCTCAAGCACAAGGCA ACGCCACTTTGTTCCTCGCCAAATTCTTCGGCCGCAGCGACCTCCTCTCCTTTATCTCCTCCGTCCCCGATCCTCAACGCCCCGCTCTGTTCCAGTCGCT GCTATTTGAAGCGTGTGGGAGGACGGTGAACCCGGTTAACGGGGCGGTGGGGCTGCTGTGGAGCCGCAATTGGCACGTGTGTCAGGCTGCGGGCGAGACC GTTCTCGCCGGAGGATCCCTGCATCCGCTTCCGGGAATTGCGGCAGGGGTTGCGCCGCCGAATTTCGACGAGTCGGATGACAGCTGCTCCGCCGCCGGAT TCGCTGCTAATCAGCTCCGCCCGGCGATTTTGGCGATTACTGGCGGGAATCGGAATCTATCATCGTCCTCCTCCACCTCGGAGTATCGACGTCGTCATAA TGCTGCTCTGGTCGGTGGTGGGAATGAGAGGAGGATTAATAACAGAGATGCGAGGGCGTCGTTTTTTGCGGAGGAATCGGAAACGACGACATTCGAGAGC ACCGGCGGGGGTTGGGAGAAACTGGTGAAAACTTTTTTTTTTTTTGGAAGAAAAAAAAAAAATTTGAGTAGAGAGGAGGAAAGAAAAAAGAGAAGCCGAG TTTTTGTCGGCAAAGGAAAGAACAAGACTTGA
AA sequence Show only first row Show all	>Lus10007758 pacid=23149237 polypeptide=Lus10007758 locus=Lus10007758.g ID=Lus10007758.BGIv1.0 annot-version=v1.0 MSCNGCRVLRKGCGENCVLRSSLRWIPTPQAQGNATLFLAKFFGRSDLLSFISSVPDPQRPALFQSLLFEACGRTVNPVNGAVGLLWSRNWHVCQAAGET VLAGGSLHPLPGIAAGVAPPNFDESDDSCSAAGFAANQLRPAILAITGGNRNLSSSSSTSEYRRRHNAALVGGGNERRINNRDARASFFAEESETTTFES TGGGWEKLVKTFFFFGRKKKNLSREEERKKRSRVFVGKGKNKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10007758 [exp]	0	1
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10026911 [exp]	1.4	0.7997
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	2.0	0.7669
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	7.6	0.7837
AT5G01910			unknown protein		Lus10025214 [exp]	16.6	0.7314
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	36.5	0.7458
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	68.2	0.7049
AT1G70780			unknown protein		Lus10034416 [exp]	73.1	0.7093
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	93.7	0.6978
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	108.0	0.6828
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10035981 [exp]	111.1	0.6756

Compare expression of checked genes

Lus10007758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.