Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43160 143 / 1e-42 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT3G19570 135 / 5e-37 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 120 / 1e-31 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT4G30710 116 / 3e-30 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 107 / 3e-27 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 67 / 3e-13 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018698 [exp] 287 / 3e-94 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 145 / 8e-41 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10014636 [exp] 142 / 3e-40 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10010780 [exp] 123 / 5e-33 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 123 / 8e-33 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 114 / 1e-29 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10038729 [exp] 88 / 2e-20 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 86 / 2e-19 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10018555 [exp] 62 / 3e-11 AT2G20815 222 / 1e-65 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119500 [exp] 194 / 9e-59 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 192 / 5e-58 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 143 / 7e-40 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 131 / 1e-35 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G181700 [exp] 125 / 1e-33 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 113 / 2e-29 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.016G000300 [exp] 91 / 2e-21 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.006G000400 [exp] 87 / 3e-20 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.013G146100 [exp] 56 / 2e-09 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G126000 [exp] 50 / 2e-07 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10007759 pacid=23149226 polypeptide=Lus10007759 locus=Lus10007759.g ID=Lus10007759.BGIv1.0 annot-version=v1.0 ATGATAGAAAGTGGATACTATGCTAGAGCGCTTCTACACTTTTTCTTCCTCAAAAGTCTGTACAGTGCACATCTAACAACAACAAGATTGCGGGAATCTG TTAGAGCAAAGAGAGCAGAATTGCAATTGCTTAGGCAGAATTTGAAGCTGGATTCCATCCTTAGGGGGCAGATGAAATATCTGGAGGATTTTGCAGTTCT GGACCAAAATTACTCCTGTTCTTTATCAGGGGCCATTGAAGCTCTGCAATCGAGCACACTTCGCCTGCCTGTTGTCGGTGGAGCACGGGCAGATGCGTTA AATGTGAGGGACGCCATCTGTTCAGCAGTTGATGTGATGCAAGCTATGGGATCTTCAATACGATTATCGCTATCAAGGGTTGGAGAAATGAAGTCTCTTG TCGCTGAACTTGGTAGCATGTCTGCAACAGAGCTTCTGCTACTTGATGAATGCAGAGGCTTGTTGTCAAACCTTACAGCAATCCAGGTGAAAGAATGCAG TCTGCGAACTCACATTGCACAGCAAAAACCAGTACTTGGCAATCCGGCAGCCGACGTTTAA
AA sequence Show only first row Show all	>Lus10007759 pacid=23149226 polypeptide=Lus10007759 locus=Lus10007759.g ID=Lus10007759.BGIv1.0 annot-version=v1.0 MIESGYYARALLHFFFLKSLYSAHLTTTRLRESVRAKRAELQLLRQNLKLDSILRGQMKYLEDFAVLDQNYSCSLSGAIEALQSSTLRLPVVGGARADAL NVRDAICSAVDVMQAMGSSIRLSLSRVGEMKSLVAELGSMSATELLLLDECRGLLSNLTAIQVKECSLRTHIAQQKPVLGNPAADV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43160		QWRF9	QWRF domain containing 9, Fami...		Lus10007759 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	3.3	0.8322
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	9.2	0.8054
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10007312 [exp]	9.9	0.7873
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10029202 [exp]	15.5	0.7930
AT2G40070			unknown protein		Lus10030402 [exp]	22.6	0.7887
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	24.1	0.7996
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	28.8	0.7852
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	32.2	0.7690
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	35.7	0.7485
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	42.8	0.7410

Compare expression of checked genes

Lus10007759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.