Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49890 120 / 2e-29 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT3G19570 85 / 1e-17 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 43 / 0.0004 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018698 [exp] 680 / 0 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 118 / 1e-28 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10014636 [exp] 115 / 4e-28 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017500 [exp] 309 / 1e-99 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 292 / 5e-93 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 122 / 6e-30 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 118 / 1e-28 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007760 pacid=23149260 polypeptide=Lus10007760 locus=Lus10007760.g ID=Lus10007760.BGIv1.0 annot-version=v1.0 ATGGTAGCTGAAGTGTCTGGTAAGAAAAACCCTCCCAAGCCTCGGCCGATAGCACAGAATCAGAACCCTGCTAGGTCCCCTCTGTTGCCTTCTGAATCGG ACAATGCTCTCGCTCCTCGCCGTTCCAGACCTCGAGAAGTTACTTCTCGCTACATGTCTTCTTCTTCATCTTCATCGACTATGCCGTCAGCCTCCAAACG TTGTCCCTCGCCGTTGATTTCGCCGCCGAAGCCTTTGATGACTCCGGCCACGCCGTCTGTTCCTTCCACGATTAAACGGTCTCAATCTGTCGAGAGGATG AGGTCCCGTACGCCTACTGGGCGGCCTAATTCTATCGATTTGAGGATCGCAAATGGTTACGGAGGCCATGCCGGTACAGCGGGAGAAATGTCGAATGCGC AGAAGCTGTTGATTACTTCAACGAGAAGCATGTCCGTGTCGTTTCAGGGAGATTCGTTCGCGCTCCGGGTGAGTAAAGCCAAGCCGGCTCCGTCCCCGAT TAGCGCGAGGAAAGGAACTCCAGAGAGACGGAAAGCGACGACTACGAGGACGGATCAGGCGGAGAACAATTCCAGGTCAGCTGAACAGCAGCGACGGTGG CCGGGTAGATTAAGAGAGCAGCCAATATCAATGACTAAAAGCATGGATTGTACTGATGACAGGAAGAGAACTATCGGATCTGGAGTCAGTGTCGGCGTAG TTAGAGCCCTCCAGAGCTCCAGGTTGGATAGTAGGTCTTCAATTGAGAGCAAATTGAGCTCGGACTCTAGCGATGTCATCGAACCAGAAAAGCCTATCGA AATAAGCGGATCTGAAGTGCACTCTGATCCTCCGTTGCCTTCTGATACTGAAAGTGTATCCTCCGGTACCGCTTCTGAGGGGAGTTTTAATGCTGGAAGG CAATCACAAAGGTCTGGACGTGTCATAGTGGTGCCAGCGAGGTTTCGGCAAGAGACTAATAACGGAGTCCGTCCGAAACAGGAGCCTCTTTCACCTGCTT CCAAGTTTGCACTCTCTATAGGACCTTTCCAGCCTAAAATTATGGCGCCCAAGAAGCTTGGAGTTGACAGTCCAGTGTCTTCACCCAAAGGTGTTACCAA TACAAGGGGGCAGTCTCCCATGCGTGCCGGAGGACAAAGGCCTGCATCGCCGAGAAAGCTTGGGACAATGTCTGCTACGGTGACACTTTGTTAG
AA sequence Show only first row Show all	>Lus10007760 pacid=23149260 polypeptide=Lus10007760 locus=Lus10007760.g ID=Lus10007760.BGIv1.0 annot-version=v1.0 MVAEVSGKKNPPKPRPIAQNQNPARSPLLPSESDNALAPRRSRPREVTSRYMSSSSSSSTMPSASKRCPSPLISPPKPLMTPATPSVPSTIKRSQSVERM RSRTPTGRPNSIDLRIANGYGGHAGTAGEMSNAQKLLITSTRSMSVSFQGDSFALRVSKAKPAPSPISARKGTPERRKATTTRTDQAENNSRSAEQQRRW PGRLREQPISMTKSMDCTDDRKRTIGSGVSVGVVRALQSSRLDSRSSIESKLSSDSSDVIEPEKPIEISGSEVHSDPPLPSDTESVSSGTASEGSFNAGR QSQRSGRVIVVPARFRQETNNGVRPKQEPLSPASKFALSIGPFQPKIMAPKKLGVDSPVSSPKGVTNTRGQSPMRAGGQRPASPRKLGTMSATVTLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	0	1
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	1.7	0.9077
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	2.4	0.8641
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	4.5	0.8640
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	5.1	0.8859
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10000779 [exp]	5.7	0.8074
AT5G47900			Protein of unknown function (D...		Lus10014112 [exp]	15.9	0.8294
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	17.7	0.8416
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	18.0	0.8428
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	21.6	0.8293
AT5G19210			P-loop containing nucleoside t...		Lus10034052 [exp]	22.6	0.7829

Compare expression of checked genes

Lus10007760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.