Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43140 221 / 1e-69 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 199 / 2e-61 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 191 / 2e-58 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G19750 81 / 1e-16 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G42770 75 / 3e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT1G52870 72 / 1e-13 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G04470 69 / 2e-13 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G24570 64 / 1e-11 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 65 / 2e-11 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT5G01075 57 / 2e-10 Glycosyl hydrolase family 35 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018700 [exp] 415 / 2e-144 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 191 / 8e-58 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 191 / 9e-58 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10001421 [exp] 83 / 6e-17 AT2G42770 274 / 7e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 77 / 6e-16 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 77 / 8e-16 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10018699 [exp] 70 / 1e-14 AT5G01075 58 / 6e-13 Glycosyl hydrolase family 35 protein (.1) Lus10038626 [exp] 71 / 5e-14 AT3G24570 273 / 1e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10039003 [exp] 67 / 3e-12 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090600 [exp] 201 / 1e-61 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 199 / 4e-61 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.014G017800 [exp] 141 / 5e-40 AT5G43140 183 / 2e-58 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G032900 [exp] 86 / 5e-19 AT2G42770 271 / 9e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 80 / 2e-16 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G029700 [exp] 79 / 2e-16 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G037100 [exp] 74 / 4e-15 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 69 / 3e-13 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.014G017600 [exp] 66 / 3e-13 AT5G01075 54 / 8e-11 Glycosyl hydrolase family 35 protein (.1) Potri.011G123700 [exp] 67 / 8e-12 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10007761 pacid=23149264 polypeptide=Lus10007761 locus=Lus10007761.g ID=Lus10007761.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTCACCGTCAGGGCACTTCGGAAACGCCTCCTCCACGGAGGTTTCTGGATGAAAGAAGCTTGCTTCGGGAATCAATCATCGGCGTTCTCCA ATTTCAGCGGTGGCGCTACGCAGGCGTACAGAACCAAAGGGAGTAGTAGTTCCAGGATCCTTCATGTTCCTCCGTCGACGACGAATGCTGTGCCGCCAAA CTCCTCTTCCCGGTGGCTCTCGACATCGCCTCGTTCAAACTCGAGGTTCGGTTTCATCCGGTGGTACCTGGACAGGCTCGAATCACAACCCATGCTCACG AAAGCCATTACCACGTCGCTGATTTACGCCGCGGCCGATCTCACTGCTCAGATGATTGCAGGATCAACATTAGATACTGTAAGGACTTTACGCATGGCTG GATATGGGTTGATGTTCTTGGGACCGGCACAGCATTTGTGGTTCAATCACATGTCCAAGATTCTACCACAGCGTGATGTGCTTTCTACCATGAAGAAAAT ATTCCTGGGACAGACAGTTCTTGGACCGGCCAATGCTGCTCTCTTCTTTTCGTATAATGCTGCTTTACAAGGGGAAAGTGGTGAAGAGATCATTGCTAGA TTGAAGCGTGACCTCCTACCAACCTTGTTGGGGGGTCTAATATTCTGGCCTATGTGTGATTTCTTGACGTTCAAAGCTGTCCCCGTGCATTTGCAGGAGA ACAAAGCTTGGCGCCTAGGTGGTAGGGGAACATATCGCCAGCGACTACCTCGAGTGGTCAAACCAACTACGAGGACCAATGATCTCACTCACTGGGACCA CCAACCTGGTTCTACGCGCCACTCTCCAAACCACAACCCAGCAATAGTACCCCTACTAACAAGTACAATCGGACGGATAGTACACTGCGATGGATCTTTT CACAAAGATTTCCCGAAAGGCAGGTTCCAATGTTCTCATCAGGAACTCCGCCGCGGACACAATCATTTAGAAGGCGGAACGTTGCTTTGTGCATCAGCTA TTGCCACGAAGCCAGAGCATTACTGGAAGCGAGAGAGATCGACCGGCGGATTGATAATCGACGCCCCTAGTGATGACTATGGAGCGGTGGGGGAGGTGGA GGAGGAGGCAAAGGCCGGAGAAGTAGAGGTGGTGGAAGATTACAGGCCAATAGATCCAGTGCCAAGCTCAAAGGCATCAGTAAAACCAGGCCCAATTGAA CATGGCACTCCACTCAACCCTTTCATCCCAAGATCCCCACCTCCATCCACCACCCCTCCTCCTTCACCCTTATTCTAA
AA sequence Show only first row Show all	>Lus10007761 pacid=23149264 polypeptide=Lus10007761 locus=Lus10007761.g ID=Lus10007761.BGIv1.0 annot-version=v1.0 MAAVTVRALRKRLLHGGFWMKEACFGNQSSAFSNFSGGATQAYRTKGSSSSRILHVPPSTTNAVPPNSSSRWLSTSPRSNSRFGFIRWYLDRLESQPMLT KAITTSLIYAAADLTAQMIAGSTLDTVRTLRMAGYGLMFLGPAQHLWFNHMSKILPQRDVLSTMKKIFLGQTVLGPANAALFFSYNAALQGESGEEIIAR LKRDLLPTLLGGLIFWPMCDFLTFKAVPVHLQENKAWRLGGRGTYRQRLPRVVKPTTRTNDLTHWDHQPGSTRHSPNHNPAIVPLLTSTIGRIVHCDGSF HKDFPKGRFQCSHQELRRGHNHLEGGTLLCASAIATKPEHYWKRERSTGGLIIDAPSDDYGAVGEVEEEAKAGEVEVVEDYRPIDPVPSSKASVKPGPIE HGTPLNPFIPRSPPPSTTPPPSPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10007761 [exp]	0	1
					Lus10035688 [exp]	3.3	0.8791
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	3.5	0.8694
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10036530 [exp]	5.1	0.7877
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10043442 [exp]	5.9	0.8390
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10043441 [exp]	7.7	0.8391
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	8.5	0.8441
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	13.6	0.8385
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	24.0	0.8355
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	25.2	0.8135
					Lus10018463 [exp]	27.3	0.8327

Compare expression of checked genes

Lus10007761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.