Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039265 [exp] 68 / 2e-14 AT5G52510 503 / 1e-170 SCARECROW-like 8 (.1) Lus10003885 [exp] 61 / 2e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007762 pacid=23149245 polypeptide=Lus10007762 locus=Lus10007762.g ID=Lus10007762.BGIv1.0 annot-version=v1.0 ATGCCACCTGGATTCCCCGACGGAGGAGGAGGATTCAGCGGCGGCGGTGGTGGTTCAGACTCCTACTTCGCCGGCAGATCGATGAACTCCTCCTCATTCT ACCCTAACAACAACACCACACAGCTTCCTTACAGAGCTCAGCAACAGCTCCCGCAAATCTTCCTCGACCAATCGTCTCAGATCGGCCACCATCGGAACCA CCACCACCACCACCTCCTCCAACAACAACAAAAGCAGCAGCAGCAACAGTCTCTGGCGAGCAGCTACATGGGGAAAAGAGCCCTCTCCGGTTCCAGGGGA TAA
AA sequence Show only first row Show all	>Lus10007762 pacid=23149245 polypeptide=Lus10007762 locus=Lus10007762.g ID=Lus10007762.BGIv1.0 annot-version=v1.0 MPPGFPDGGGGFSGGGGGSDSYFAGRSMNSSSFYPNNNTTQLPYRAQQQLPQIFLDQSSQIGHHRNHHHHHLLQQQQKQQQQQSLASSYMGKRALSGSRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007762 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	19.2	0.6880
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10024165 [exp]	28.7	0.6883
AT2G25920			unknown protein		Lus10002434 [exp]	29.7	0.6701
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	37.2	0.6825
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	60.3	0.6332
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	62.9	0.6614
AT3G53970			proteasome inhibitor-related (...		Lus10032055 [exp]	71.8	0.5747
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	103.1	0.6107
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	111.7	0.6232
AT5G13030			unknown protein		Lus10031224 [exp]	149.7	0.5996

Compare expression of checked genes

Lus10007762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.