Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43130 558 / 0 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2) AT1G27720 372 / 2e-116 TAF4b TBP-associated factor 4B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018701 [exp] 1573 / 0 AT5G43130 596 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10008297 [exp] 1253 / 0 AT5G43130 448 / 3e-144 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10033265 [exp] 1222 / 0 AT5G43130 404 / 1e-127 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10038047 [exp] 241 / 5e-73 AT5G43130 145 / 1e-39 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018000 [exp] 816 / 0 AT5G43130 605 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Potri.002G119900 [exp] 815 / 0 AT5G43130 634 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain CL0012 [flax] [poplar] Histone PF05236 [flax] [poplar] TAF4 Transcription initiation factor TFIID component TAF4 family
Representative CDS sequence Show only first row Show all	>Lus10007763 pacid=23149244 polypeptide=Lus10007763 locus=Lus10007763.g ID=Lus10007763.BGIv1.0 annot-version=v1.0 ATGCAACCTCAGGATGAAACGATGCATTCCGGTGCTGACGTTGAGGCCTTCCAGGCTGCACTCAATCGGGATATCGAAGGGGACAAAAATTCCAATTCCC AGACACATGATTCGGCTGAAGATGTAGTAGCTTTTCTGAATGAAGGGAACCAAGGTTCCTCTCAGCCATTTCAAAGCTGGCCATCGAGAGAAGATGGAAT TCCAGCTGGTTCAAGCAACCAGGGGCTACATAATTTATCACATGCACAACACTTATCACACCAACACCAGCAATCATCTATGGTGCTCGATCAACACTCA TCTTTAGCTGAGAAACATCAGCAACATAATGATGTGTCACAGGGACAAAATCACACTTCAACAATGCATCAGAACCAACCCCAAGATGATCAACATGGGA AGGTGGAACAGCAGCCTACTCAAGCACACCGGACCACTGAGATCCCAATCTCAGATAAAAGTTCAGCTCCAATATCTGAGCCTGGAAAATCACAGAATTC TGCTGCTGAATCCCATTACCTAAAGTATTCTAAGATGCCCCAACAGATGACAGGCACAGAACAGGCCATGAACTCGAATAATCAGGGAAAGCAAATACCA TTTGTGTTGTTGCTCCCTGCCTTAAAACCCCATCTTGATAAAGACAGAGAGATGCAGCTTCAGACCATCTTCAATAAACTAAAGAGAAATGAAATCCCAA AGGATCAGTTTGTCAGACATTTGAGGACCATAGTAGGGGATCAAGTGCTGAAGCTGGCAGTAGCTCAGTGGCAATCACAGCATGGAGCAAACCAATCCCA ATTGCAGTCTCAGGCTTTAGTCCGTCCACAAAATACCAGGATGCCCGTCAGTTCCAATCCCTCTCAACTCCCTGATGCCCATCCATTTGCACTTCCGACG GTATCAAGTTCTTCTAAAGACACAGCTTACAATGGTCATCCATCAGTAAAATTGCAGGCTGATAGTTCAAATGATACCCTTACTGGTACAATTAATCCCA AAACCCGACAGGTTGATTCTCATGCAGTCAACTTTAGCCAAATGACTTCAGCCAGTGCAAACATAGTCAACCAAGACAGAGATTCCTCTTCAATTTCAAC ACAAGGACACAACAAGCAAAACCAACAACATTTACACTTTCCACAGACGTCCTTTCCCATGTATGGGGGTACTGGAAGTAATTTCCCCCCATACTCTGGT ACTGGGAAAATTGTTTCAGGCGCTTCTATGAAGCCACAGCCTCCAGAGATACAAATGAGACAAATTTCACATCATCAAAGTATGGGTATAAATCAAGTAG GAACCCCCAGCCAGGCAATGAGCACCCTGAATGTGCCAAAATTGGAGAGGCAAGGTTCTGTTACTGATGCAAACAGACTGTATAGTGGCCCAACGTCCAC TTATCCTAGCCGGCCAGCAATGCAGCAAAATCAAGTTCCTTGGCAAACATCAGCAAACAAAGACCAAAGTCAAGTCTCATTCTCTCCTATGAATTCTGTA AAACAGGAAGTAGTTGAACAGGCTGGTGAGCAGTCACAGAAATCCCAGTTTGGGAACCATCATGAGTTATCTGCGGGTACTGAGCATGGAAACACAATGT TGGGGAGCTTCAGGGACAGTTCAGATAAGCATCCTTCAAGTGTCGGTTTCTCAACAGCCTCTGATACTGCGCCCTCAAGTTCAGTTGGTCCTTCCAATAC GACTCAGATGGATCATAATACACAGGTTGGCCCCAGGGTTCCTCCCTCTTCTGCTTCACTGAATACAAGAACTCCCCCTAAAAAACCTTCCGTGGGGCAA AAAAAACCACCAGAAGCACTTGGATCTTCACCGCCTGCAGCAAGTAAGAAACAGAAAGTTTCTGGTGCCTTTCTGGATCAAAGCATTGAACAACTGAACG ATGTCACTGCTGTCAGTGGAGTTAATATTCGGGAAGAGGAAGAACAATTATTCTCTGCGACCAAGGAGGACAGTCGAGTCTCTGAAGCATCTAGAAGAGT TGTACGAGAAGAAGAAGAGAGGCTGCTTTTGCAGAAAACTCCTCTTCAGAAAAAAGTGGCTGAGATCATGGCCAAGTGTGGTCTGAAGAATGTCAGCAGT GATGTTGAAAAATGCTTGTCCTTGAGTGTGGAGGAAAGAATGCGAAGTTTGATGAGTAACATGGTCAGAATGTCAAAACAGAGGATTGACTCAGAGAAGT CCAGACACAGGACAGTAGTTACCTCTGATGTCCGGCAACAACTCGTGACAATGAACCAGGAAGCTAAGTCTGAATGGGAGAAAAACCAGGCTGAAGCAGA AAAGCTCCGGAGAGTAAATGAACCTGATGATGATGGTGGATCCGAAGGTGACAGGGAAAAGGATGATGGGCGAGGAAAAGCAACCAAGGTGAACAAGGAG GAGGATGACAAAATGAGAACAAACGCTGCAAATGTTGCTGCAAGAGCTGCTGTTGGGGGAGATGACATGTTGTCAAAATGGCAACTCATGGCCGAGCAAG CTCGACAGAAACGTGAAGGGGGTCCAGATACTGCATCGTCTTCTCAATCGCCATCAGATGGAAGCCATAAGCCTCAGACATTGGCTGGAAGGACCAACAA TCAAGATGGACAAAAGAACCCTTCTTCAGCATCCTTGGGTGGTAGAAAATTTGGGAGAAACGACGGTGCAGCAGCTTCGTTGAGGGAGGACCGGACTTTA TCTATCAAGGATGCCATTGCAGTGATGGAACGAGAGCCCCAACTGTCCAAATCGACCTTGATCTATAAACTATATGAGAAGATTCGGTCGAATGTGCCAC CTGAGTGA
AA sequence Show only first row Show all	>Lus10007763 pacid=23149244 polypeptide=Lus10007763 locus=Lus10007763.g ID=Lus10007763.BGIv1.0 annot-version=v1.0 MQPQDETMHSGADVEAFQAALNRDIEGDKNSNSQTHDSAEDVVAFLNEGNQGSSQPFQSWPSREDGIPAGSSNQGLHNLSHAQHLSHQHQQSSMVLDQHS SLAEKHQQHNDVSQGQNHTSTMHQNQPQDDQHGKVEQQPTQAHRTTEIPISDKSSAPISEPGKSQNSAAESHYLKYSKMPQQMTGTEQAMNSNNQGKQIP FVLLLPALKPHLDKDREMQLQTIFNKLKRNEIPKDQFVRHLRTIVGDQVLKLAVAQWQSQHGANQSQLQSQALVRPQNTRMPVSSNPSQLPDAHPFALPT VSSSSKDTAYNGHPSVKLQADSSNDTLTGTINPKTRQVDSHAVNFSQMTSASANIVNQDRDSSSISTQGHNKQNQQHLHFPQTSFPMYGGTGSNFPPYSG TGKIVSGASMKPQPPEIQMRQISHHQSMGINQVGTPSQAMSTLNVPKLERQGSVTDANRLYSGPTSTYPSRPAMQQNQVPWQTSANKDQSQVSFSPMNSV KQEVVEQAGEQSQKSQFGNHHELSAGTEHGNTMLGSFRDSSDKHPSSVGFSTASDTAPSSSVGPSNTTQMDHNTQVGPRVPPSSASLNTRTPPKKPSVGQ KKPPEALGSSPPAASKKQKVSGAFLDQSIEQLNDVTAVSGVNIREEEEQLFSATKEDSRVSEASRRVVREEEERLLLQKTPLQKKVAEIMAKCGLKNVSS DVEKCLSLSVEERMRSLMSNMVRMSKQRIDSEKSRHRTVVTSDVRQQLVTMNQEAKSEWEKNQAEAEKLRRVNEPDDDGGSEGDREKDDGRGKATKVNKE EDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKREGGPDTASSSQSPSDGSHKPQTLAGRTNNQDGQKNPSSASLGGRKFGRNDGAAASLREDRTL SIKDAIAVMEREPQLSKSTLIYKLYEKIRSNVPPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	0	1
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	1.4	0.7544
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	10.9	0.7001
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	14.3	0.7281
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	17.3	0.6801
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	18.4	0.6766
AT5G45290			RING/U-box superfamily protein...		Lus10001683 [exp]	20.6	0.6887
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	27.5	0.6745
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	34.1	0.6500
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	35.0	0.6124
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	38.8	0.6466

Compare expression of checked genes

Lus10007763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.