Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24230 119 / 2e-30 ACBP3 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) AT4G27780 99 / 3e-23 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 87 / 5e-19 ACBP1 acyl-CoA binding protein 1 (.1) AT3G05420 50 / 1e-06 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 49 / 5e-06 ACBP5 acyl-CoA binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018702 [exp] 445 / 1e-151 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10005910 [exp] 93 / 7e-21 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10022382 [exp] 91 / 3e-20 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10015176 [exp] 53 / 2e-07 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 51 / 8e-07 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 51 / 8e-07 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 51 / 1e-06 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10013605 [exp] 39 / 0.0005 AT1G31812 132 / 1e-41 acyl-CoA-binding protein 6 (.1) Lus10021246 [exp] 39 / 0.0009 AT1G31812 132 / 1e-41 acyl-CoA-binding protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120200 [exp] 171 / 4e-50 AT4G24230 113 / 3e-28 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.014G018700 [exp] 164 / 4e-47 AT4G24230 133 / 2e-35 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.015G010200 [exp] 100 / 9e-24 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.012G017700 [exp] 100 / 1e-23 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.013G018800 [exp] 52 / 3e-07 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 49 / 3e-06 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.001G130200 [exp] 40 / 0.0003 AT1G31812 140 / 4e-45 acyl-CoA-binding protein 6 (.1) Potri.003G103700 [exp] 39 / 0.0009 AT1G31812 138 / 2e-44 acyl-CoA-binding protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [flax] [poplar] FERM_M PF00887 [flax] [poplar] ACBP Acyl CoA binding protein
Representative CDS sequence Show only first row Show all	>Lus10007764 pacid=23149241 polypeptide=Lus10007764 locus=Lus10007764.g ID=Lus10007764.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTTCAGGAGCTCTTGATCACCTTACTTGTTGCTATTTTCATCTCTTTTCTCATCGCCAACGTCGTTTCCTCAAGGAGATCAGGTGATCAGA ACGGCGTGGGAGGATTCAGAGAAGAAGTCATTGCGGAGGAGTTGAATGATACCGGACGATTGGAAGCTACGGGGCTACGTAGCGAAGGGCGAGCTGAGCT TGTTGGAGAAGCAGCGGCAAGAGTTGAGGAATTTGTTGGAGAACCGGCTCCGGTTGAGGAAGAATCTAGAGCAGACGAACGCCGTGAATTGACCGAGAAA GGAAGAGAGGCCGAGAAGGAGGTACAAACACACAGAGAGTTTATGCCTGAAGAGATGGAAGATGGAGTTACGAAATTGAGCGACGATCATCAGAATCTTG CTGAAGTTACGGCGGAGAAGACTGGAGAAAAAGAAATCGTTGCTGACGAGGGGAAAGAAGGGAATTCTGTGGAAGATGAAGCTGTTGAGATTGAATCAGC TCCTCGTACTGAACGACCGGAGGAAATCAGAATGGAGGAGGAGGAAGCAAGTGGTGAAGTTGTTGAAGAGAAGAAAGTAGAGATTGATATAGAGGATGAT TGGCAAGGGATTGAGAGAAGTGATTTGGAGAAGGAGTTTGCTAAAGCTGCAAAATTTGTGGAGTCTGGATATGGGGAAGAGAAGTTAGCAAGCGTTGGGA GTGATGTAGTGATGCAGCTGTATGGGCTTCATAAGCTTGTTACTGAAGGGTCTTGCCATGAACAGCCACCAATGGCTCTCAAGCTCTCTGCTCGTGCCAA GTGGAATGCGTGGCAGAAGCTTGGAAATATGGATCCGGAGGTGGCCATGAAGCAGTATGTCAATCTTCTATCAGATAGTGTCCCACAGTGGGCGGATCAA CAATCTATCGGAGAGGAGACCATACCGATGATGCCATTGGAGGCAGTTGATGCTTCCACAGCTTCGTCTCATCGCACTAACTTCCCCTATGAAGAACGTG GTTCAGAACCCAAGTATGATTCCGAAACAAGTGAATCGACTGGTGTCTCGACTTTGGAGAATAAGGTTAAAGAATGA
AA sequence Show only first row Show all	>Lus10007764 pacid=23149241 polypeptide=Lus10007764 locus=Lus10007764.g ID=Lus10007764.BGIv1.0 annot-version=v1.0 MELFQELLITLLVAIFISFLIANVVSSRRSGDQNGVGGFREEVIAEELNDTGRLEATGLRSEGRAELVGEAAARVEEFVGEPAPVEEESRADERRELTEK GREAEKEVQTHREFMPEEMEDGVTKLSDDHQNLAEVTAEKTGEKEIVADEGKEGNSVEDEAVEIESAPRTERPEEIRMEEEEASGEVVEEKKVEIDIEDD WQGIERSDLEKEFAKAAKFVESGYGEEKLASVGSDVVMQLYGLHKLVTEGSCHEQPPMALKLSARAKWNAWQKLGNMDPEVAMKQYVNLLSDSVPQWADQ QSIGEETIPMMPLEAVDASTASSHRTNFPYEERGSEPKYDSETSESTGVSTLENKVKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	0	1
AT4G17790			SNARE associated Golgi protein...		Lus10000905 [exp]	1.4	0.9034
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	2.4	0.8981
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	6.7	0.8830
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	10.4	0.8872
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	11.0	0.8847
AT3G18620			DHHC-type zinc finger family p...		Lus10016564 [exp]	12.3	0.8582
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	14.1	0.8693
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	14.4	0.8655
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	14.5	0.8744
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	16.9	0.8411

Compare expression of checked genes

Lus10007764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.