Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 962 / 0 ARA12 Subtilase family protein (.1) AT5G51750 749 / 0 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 734 / 0 Subtilase family protein (.1) AT3G14067 701 / 0 Subtilase family protein (.1) AT3G14240 694 / 0 Subtilase family protein (.1) AT4G34980 691 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT2G04160 579 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G04110 560 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 557 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 551 / 0 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011089 [exp] 960 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 940 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 937 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10018702 [exp] 892 / 0 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 764 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 761 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 702 / 0 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 689 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 662 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018900 [exp] 1114 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 1109 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 881 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 754 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 738 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 730 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.004G173900 [exp] 728 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G167300 [exp] 723 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 711 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 710 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10007765 pacid=23149230 polypeptide=Lus10007765 locus=Lus10007765.g ID=Lus10007765.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCAGCAGATGAAGCAACGAACCAGAGGTCTAACCAGAAGACCACTACTTACATAATTCACATGGACCAATCCCACAAGCCGGAAAGCTTCG ACGACCATGAACAATGGTACGGCTCTTTATTGAAAACCGTATCACAATCAGCCGACATGCTCTACACATACAACACACTTATCCACGGATACTCCGTCAC ACTTACTCCTCGAGAAGCCGAGTCACTATCGAAACAGCCTGGCGTTCTCTCTGTCTCGCTCGAAACCGTATACCAACTCCACACAACTCGAAGCCCTTTG TTTCTCGGCTTGGAACAACGAAGCCAACAGTCTCTCCTTCCAGCTTCCGCATCAGTCAGCGAAGTCACCGTGGGAGTCCTCGACACGGGTGTCTGGCCCG AACTCGATAGCTTCAACGATAAAGATCTCGGTCCGATCCCAGCCACATGGAAAGGAACCTGCGAGGTTGGTAAAGGTTTCGATTCCACCAAATGTAATAA GAAACTTATCGGAGCGAGATACTTCTCGAAGGGGTACGAAGCAGCGTACGGACCTGTTGACGAAACAATTGAGTCCAAATCACCGAGAGACGACGATGGT CACGGAAGCCACACTTCGACTACCGCGGCTGGCTCTGTTGTTTCGGGAGCCAGCCTGTTCGGTTTCGCAGCGGGGACAGCTCGCGGGATGGCTCCGCAAG CTCGAGTTGCGGTCTACAAAGTGTGCTGGCTAGGTGGATGCTTCGGGTCCGACATCCTGGCGGCGATGGAGAAGGCGGTTGAAGATGGAGTCAACGTAAT TTCCATGTCAATCGGGGGAGGGCTTTCCGATTATTACAGAGATACCGTATCAATCGGAGCTTTTGCTGCAGCTGCACAGGGGATATTCGTCTCGTGTTCC GCCGGAAATGGAGGTCCCAGTCAAGGTAGCTTGTCGAATGTTGCCCCATGGATAACAACTGTGGGGGCCGGCACACTGGATCGGAATTTCCCTGCTTATG TAACCTTGGGAACCGGGAACAATTTCACCGGAACGTCGCTTTACAGTGGGAAGCCTCTCCCGGAAAACACGCTGGTCCCACTGGTTTACGGTGCAAACGC GAGCGATTCCGTCTCTGGAAATCTCTGTCAATCGGACAGTCTGATTCCGGCGAAAGTTGCAGGGAAAATCGTGATCTGCGATCGTGGTGGGAACAGCAGA GCAGCAAAGGGTCTGGAAGTGAAGAAATCCGGTGGGATCGGGATGATTCTGGCTAATACAGAGTTGTTCGGGGAAGAGCTGGTTGCGGATTCACACCTTA TACCATCATCTGCAGTAGGGCAGAAAGTTGGGGATGCTATTAAAAAATATGCGTCCTCCGATCCTAAACCAACCGCCACGATCTCTTCCGGCGGGACACA TGTCGGGATCGAGCCGTCGCCGGTTGTTGCGGCGTTCAGTTCCAGAGGCCCCAATTTGGTGACTCCGGAAATTCTCAAGCCTGATGTAATCGCGCCAGGG GTTAACATCCTGGCTGGATGGACAGGCGCCATAGGTCCGACTGGGCTAGCGAACGACACCAGAAGCGTCAGCTTCAACATCATTTCAGGAACTTCAATGT CTTGCCCTCATGTAAGTGGCTTAGCTGCGTTGATCAAGGCTGCTCATCAAGATTGGAGCCCAGCAGCGATTAGGTCAGCTCTTATGACGACTGCCTATAC TGCTTACAAAACTGGAGGGGTGATCCAGGATGTGTCGACTGGGAAACCGGCGACTCCGTTTGATTATGGTGCTGGACATGTTGACCCGGTTGCAGCGCTA GATCCGGGACTTGTCTACGATGCAACGGTGGAGGACTATTTCGGGTTTCTATGTGCTTTGAACTACACTCCGGAGTTGATCAAAAGAGCTACTAACAAGG CCTTTACTTGTGACTCGAGGAAAAGATACAGTCTGGGTGATTTTAACTACCCGTCTTTTTCGGTTGCTCTTCAGACAGCTTCGGGGAAAGGAGGGGGTTC TGGTTCGACCACAATGGTGAAGCATAGCAGGACGCTTACGAATGTGGGGGCTCCGGGGACTTATAAGGTGGAATTGGCTTCGGAAACTAAGGCGGTGAAG ATGACTGTTGAGCCGGCAACTCTGACTTTTGCTCAAGAGAAAGAGAAGAAGAGTTATACTGTGACGTTTACTGCAAGTTCGATGCCGTCTGGAACAAGTA GCTTTGCTCATCTGGAATGGTCTGATGGGAAGCATATGGTTCACAGTCCCGTAGCTTTCACCTGGGCGTAA
AA sequence Show only first row Show all	>Lus10007765 pacid=23149230 polypeptide=Lus10007765 locus=Lus10007765.g ID=Lus10007765.BGIv1.0 annot-version=v1.0 MAAAADEATNQRSNQKTTTYIIHMDQSHKPESFDDHEQWYGSLLKTVSQSADMLYTYNTLIHGYSVTLTPREAESLSKQPGVLSVSLETVYQLHTTRSPL FLGLEQRSQQSLLPASASVSEVTVGVLDTGVWPELDSFNDKDLGPIPATWKGTCEVGKGFDSTKCNKKLIGARYFSKGYEAAYGPVDETIESKSPRDDDG HGSHTSTTAAGSVVSGASLFGFAAGTARGMAPQARVAVYKVCWLGGCFGSDILAAMEKAVEDGVNVISMSIGGGLSDYYRDTVSIGAFAAAAQGIFVSCS AGNGGPSQGSLSNVAPWITTVGAGTLDRNFPAYVTLGTGNNFTGTSLYSGKPLPENTLVPLVYGANASDSVSGNLCQSDSLIPAKVAGKIVICDRGGNSR AAKGLEVKKSGGIGMILANTELFGEELVADSHLIPSSAVGQKVGDAIKKYASSDPKPTATISSGGTHVGIEPSPVVAAFSSRGPNLVTPEILKPDVIAPG VNILAGWTGAIGPTGLANDTRSVSFNIISGTSMSCPHVSGLAALIKAAHQDWSPAAIRSALMTTAYTAYKTGGVIQDVSTGKPATPFDYGAGHVDPVAAL DPGLVYDATVEDYFGFLCALNYTPELIKRATNKAFTCDSRKRYSLGDFNYPSFSVALQTASGKGGGSGSTTMVKHSRTLTNVGAPGTYKVELASETKAVK MTVEPATLTFAQEKEKKSYTVTFTASSMPSGTSSFAHLEWSDGKHMVHSPVAFTWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	0	1
AT1G07040			unknown protein		Lus10013272 [exp]	3.5	0.9086
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	3.5	0.9102
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	4.5	0.8986
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	9.6	0.8830
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	9.8	0.8936
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	11.4	0.8930
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	12.7	0.9009
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	13.7	0.9008
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	13.7	0.8804
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	18.0	0.8993

Compare expression of checked genes

Lus10007765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.