Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022369 [exp] 308 / 1e-109 AT5G45360 40 / 2e-04 F-box family protein (.1) Lus10037278 [exp] 46 / 3e-06 AT5G45360 352 / 1e-121 F-box family protein (.1) Lus10035689 [exp] 46 / 4e-06 AT5G45360 351 / 6e-121 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236200 [exp] 44 / 1e-05 AT5G45360 349 / 2e-120 F-box family protein (.1) Potri.008G204800 [exp] 39 / 0.0007 AT4G15563 143 / 6e-43 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007767 pacid=23165887 polypeptide=Lus10007767 locus=Lus10007767.g ID=Lus10007767.BGIv1.0 annot-version=v1.0 ATGGAAAAACTACCCGCTGAACTCTGGCTCAAGATCTTCTGCTCCTTTGATCACCCAACTCTTGCTTCCACCCAGCAAGTGTGCAAGAAATGGAAGGCAA TTGGATCGGAGGATACTCTATGGTCCAATCTCTTCAATCAGAGATGGGGAACGGATCGTTCCGAATTCTACGCCCCACTCGATTCCAGATCCTGGAAGGA TGTCTATGCTGTTCAAGATCGTTGCGATCGAGTTGGATTGGGGCTGAAGATAATCAGAGAAGGAGGGGACTATTATCTGGTTCACCAGGGCGAAATTCAA CGATATCTGGGTTCTCCCAGACAGAGAAAAGTCACAAATAAGGATCATGGTTCTGTGAAAGCTGAATCGTACATTGCCAATGGTGGTGGTGGAAATGGGA TCTTGGATAAGATACTTTTCTTCATTGGAGATCTGGAAGTTGCATCTGCAGATGCCAAACGCGGTCGCCTCACATAA
AA sequence Show only first row Show all	>Lus10007767 pacid=23165887 polypeptide=Lus10007767 locus=Lus10007767.g ID=Lus10007767.BGIv1.0 annot-version=v1.0 MEKLPAELWLKIFCSFDHPTLASTQQVCKKWKAIGSEDTLWSNLFNQRWGTDRSEFYAPLDSRSWKDVYAVQDRCDRVGLGLKIIREGGDYYLVHQGEIQ RYLGSPRQRKVTNKDHGSVKAESYIANGGGGNGILDKILFFIGDLEVASADAKRGRLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	0	1
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	2.0	0.8201
AT4G18690			unknown protein		Lus10015276 [exp]	4.0	0.7960
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	8.6	0.8113
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	9.9	0.8059
AT3G27100			unknown protein		Lus10041556 [exp]	11.2	0.7995
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	12.0	0.7564
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10012252 [exp]	12.1	0.7986
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	12.2	0.8035
AT2G33030		AtRLP25	receptor like protein 25 (.1)		Lus10003462 [exp]	17.5	0.7268
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	20.5	0.8017

Compare expression of checked genes

Lus10007767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.