Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24350 179 / 1e-49 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022371 [exp] 380 / 3e-119 AT5G24350 2384 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020000 [exp] 228 / 2e-66 AT5G24350 2563 / 0.0 unknown protein Potri.015G008500 [exp] 224 / 4e-65 AT5G24350 2514 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007768 pacid=23165880 polypeptide=Lus10007768 locus=Lus10007768.g ID=Lus10007768.BGIv1.0 annot-version=v1.0 ATGCCCACGGTGGACAGAGCACAGCAAGTGTTGGGGTTGATATTTCTTCTAGAGAGCAAATCTTCGGACAGTAGAAAAATTCCATCGAAGCACAGTGACT CAAGTGACTTGCAGAACATGAACGAGAAAACAGAAGAAAGTACTGATGCTTCCCAGATGTACTGGAGTCTGATGTCACTTTCTAAGAGATCTGTGCATGA AATGTACAATGTCTTAATTGGAAATGGTAAATATCAGTCAGCATTGGACTTCGCCAATCGTTATGGCCTAGAAAGAGACGAAGTATTTAAATCACAATGG CTGCAATCTTCCAAGGGAAACAAAGATATTAATATGTTTTTAAGAAAAATTAAGGACCTTAGTTTTGTCCTTTCTCAATGCTGCGAAAGGACCGGACCAA CGGAAGATGACATGAAAGCTCTTCTTGCTTACGGGATTGGTGCATCTGATAAGTGCTTTTCTGAAGAAGAGAATTATGATAGCCCTATATGGGACTTCCG AATGGCCAGGCTTCAGTTACTCCTATTTAGAGATAGGTTAGAGACGTATCTGGGCATAAACATGGGCAGATACAACACAACGCCTCCGTATCCTCCGACC AATGAGTTTGAGTTCGGACAAGTTAGTGAAGTTGTGACCACTGAGACTGCCACAAACACAGATGTAGACGCCAGTCAGAGCCATACCAACAACACAACGC CTCCGTATCCTCCGACCAATGAGTTTGAGTTCGGACAAGTTAGTGAAGTTGTGACCACTGAGACTGCCACAAACACAGATGTAGACGCCAGTCAGAGCCA TACCAACAACACAACGCCTCCGTATCCTCCGACCAATGAGTTTGAGTTCGGACAAGTTAGTGAAGTTGTGACCACTGAGACTGCCACAAACACAGATGTA GACGCCAGTCAGAGCCATACCAACAACACAACGCCTCCGTATCCTCCGACCAATGAGTTTGAGTTCGGACAAGTTAGTGAAGTTGTGACCACTGAGACTG CCACAAACACAGATGTAGACGCCAGTCAGAGCCATACCAACAACACAACGCCTCCGTATCCTCAGATATCCTCCGACCAATGA
AA sequence Show only first row Show all	>Lus10007768 pacid=23165880 polypeptide=Lus10007768 locus=Lus10007768.g ID=Lus10007768.BGIv1.0 annot-version=v1.0 MPTVDRAQQVLGLIFLLESKSSDSRKIPSKHSDSSDLQNMNEKTEESTDASQMYWSLMSLSKRSVHEMYNVLIGNGKYQSALDFANRYGLERDEVFKSQW LQSSKGNKDINMFLRKIKDLSFVLSQCCERTGPTEDDMKALLAYGIGASDKCFSEEENYDSPIWDFRMARLQLLLFRDRLETYLGINMGRYNTTPPYPPT NEFEFGQVSEVVTTETATNTDVDASQSHTNNTTPPYPPTNEFEFGQVSEVVTTETATNTDVDASQSHTNNTTPPYPPTNEFEFGQVSEVVTTETATNTDV DASQSHTNNTTPPYPPTNEFEFGQVSEVVTTETATNTDVDASQSHTNNTTPPYPQISSDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24350			unknown protein		Lus10007768 [exp]	0	1
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007121 [exp]	1.7	0.9519
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	6.9	0.9578
AT5G24350			unknown protein		Lus10022371 [exp]	7.7	0.9496
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10002548 [exp]	8.9	0.9457
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	9.3	0.9211
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	9.5	0.9558
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	11.8	0.9073
					Lus10000297 [exp]	12.0	0.9271
AT3G12440			Polynucleotidyl transferase, r...		Lus10000103 [exp]	12.0	0.9501
					Lus10001189 [exp]	12.2	0.9271

Compare expression of checked genes

Lus10007768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.