Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27730 887 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 862 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 845 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G10770 843 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G64410 736 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 716 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G26590 652 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT4G16370 649 / 0 ATOPT3 oligopeptide transporter (.1) AT5G55930 646 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022372 [exp] 1201 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10006581 [exp] 856 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10041897 [exp] 848 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10028445 [exp] 818 / 0 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022543 [exp] 689 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 688 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 669 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 665 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 664 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G019700 [exp] 951 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 944 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.003G145500 [exp] 860 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 842 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.009G079500 [exp] 723 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 722 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 706 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.016G004800 [exp] 681 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 657 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G006000 [exp] 654 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10007770 pacid=23165891 polypeptide=Lus10007770 locus=Lus10007770.g ID=Lus10007770.BGIv1.0 annot-version=v1.0 ATGCGTAATCCCGCAGGTGGAAGTAACGGTCCCCAAAACAGACGACCAGACACTACCAGTGATGACATTCAGGATGTGGGTTTTAGGGATAGCGTCATGT GTCCTCTTGTCCTTTGCCAACCAGTTTTTCTGGTACAGGACACAACCTCTGTCCATCTCTGCCATCTCTGCACAGATTGCCGTAGTGCCCATTGGACATC TTCTCGCCAAGGTGCTACCTACTCGCGCCTTTTTAGCAGGGACAAAGATGAAATTTACGTTGAACCCGGGTCCGTTCAACATCAAGAGCATGTGCTCATC ACCATCTTTGCGAACTGTGGCGCTGGGACTGTGTACGCTACTCATATTCTGAGTGCTGTTAAGCTGTATTACAAGAGGCAGATGACCTTCATTCCTGCCT TGCTCGTCATGATCACCACTCAGGTTTTAGGGCTTGGGTGGGCTGGACTTTTCAGGAGGTACCTAGTGGAGTCAGAGGAGATGTGGTGGCCTAGCATTTT AGTGCAGGTCTCTCTGTTCAGGGCACTACATGAGAAAGTGAAGAGGCCAAAAGGAGGAGTAAGCAGGACCCAGTTCTTCCTCATAGTCCTAGTCTGCAGC TTCTGCTACTACATCTTGCCAGGCTACCTATTCACCATGCTAACCACTTTCTCATGGGTTTGTTGGATGTTCCCACACTCCATCCTTGGACACCAACTCG GTTCAGGGATGAGTGGACTTGGGATCGGATCCTTCGGTTTGGATTGGTCTACCATCGCATCTTACCTCGGAAGCCCACTTGCTAGCCCTTGGTTCGCAAC TGCAAACATTGCTGTCGGGTTCTTCCTTGTTATGTATGTTATGACACCTCTGACTTACTGGTCTGACACTTACAAGGCGAAGACGTTTCCTTTGTACTCA AGCAAGTTGTTTTTGTCGAATGGGTCGCGCTATGACATCCTCAGCATTGTTGATTCGAAGTTCCATCTTGACAGAGAAGTTTACTCCCAGTTTGGCCCTG TAAATCTCAGCACTTTCTTTGCCATGACCTATGGTATTGGATTCGCTACCTTGGCTGCTACCGTTGTTCATGTTCTCCTCTTCAATGGAAGGGACTTGTG GAAGCAGAGCAAGAGGGCATTTTCTGGGAAAAGGGGAATGGACATACACACAAGGCTGATGAAGAGATACAAGCAAGTTCCATCTTGGTGGTTTGTTGTG ATTCTGGTGGCGAACATTGCACTTATAATCTTTGCCTGCGAGTATTACAATGCAACTCTTCAGCTGAAATGGTGGGGAGTTCTGCTAGCTTGTGCTCTAG CCATTTTCTTCACTCTCCCCATAGGAATCATCAATGCCACCACCAACCAGCAACCTGGGTTGAACGTTATTACAGAGTACATTATTGGTTATCTATATCC TGAACGTCCAGTTGCAAACATCTGCTTCAAAGTGTATGGATACATCAGTATGGCTCAAGCTCTAACCTTTGTTGGAGATTTCAAGCTTGGTCACTACATG AAGATTCCACCTAGATCAATGTTCACTGTACAGGTGGTGGGAACAGTGTTATCAGTGATAGTGTACCTAGTAACAGCATGGTGGATGATGGGATCAATCC CAAACCTATGCGACCAAGAGAAGCTCCCATCCGACAGCCCCTGGACATGTCCGATGGACACGGTCTTCTTCGACGCCTCGGTGATATGGGGGCTGGTGGG ACCGCGAAGGATCTTCGGGGACCTTGGTGAGTACGGCAACGTCAACTGGTTCTTCCTGGGAGGAGCTGTGGCTCCGTTTCTGGTGTGGCTGGCTCACAGG GCTTTCCCTAGTCAGCGGCATTGGATCAGGTACATCAACATGCCTGTCTTGCTCGGTGCCACTTCCATGATGCCACCAGCTTCCGCGGTGAACTTCACGA GCTGGATCGCGGTGGGGTTTTTGTCGGGATTCGTGATGTTTAGGTGGAGGCCAAAGTGGTGGAATCGTTACAATTACGTGATGTCTGGTGGACTTGATGC CGGTACTGCTTTCATGACAATATTGATTTTCTTCTGCTTACAGAATCGGAATGTGGGGATTGATTGGTGGGGTACGAGACCTGATGGGTGTCCCTTGGCA CATTGTCCTACTGCTCCTGGTGTAGCAGTCGACGGATGTCCAATCGCCTGA
AA sequence Show only first row Show all	>Lus10007770 pacid=23165891 polypeptide=Lus10007770 locus=Lus10007770.g ID=Lus10007770.BGIv1.0 annot-version=v1.0 MRNPAGGSNGPQNRRPDTTSDDIQDVGFRDSVMCPLVLCQPVFLVQDTTSVHLCHLCTDCRSAHWTSSRQGATYSRLFSRDKDEIYVEPGSVQHQEHVLI TIFANCGAGTVYATHILSAVKLYYKRQMTFIPALLVMITTQVLGLGWAGLFRRYLVESEEMWWPSILVQVSLFRALHEKVKRPKGGVSRTQFFLIVLVCS FCYYILPGYLFTMLTTFSWVCWMFPHSILGHQLGSGMSGLGIGSFGLDWSTIASYLGSPLASPWFATANIAVGFFLVMYVMTPLTYWSDTYKAKTFPLYS SKLFLSNGSRYDILSIVDSKFHLDREVYSQFGPVNLSTFFAMTYGIGFATLAATVVHVLLFNGRDLWKQSKRAFSGKRGMDIHTRLMKRYKQVPSWWFVV ILVANIALIIFACEYYNATLQLKWWGVLLACALAIFFTLPIGIINATTNQQPGLNVITEYIIGYLYPERPVANICFKVYGYISMAQALTFVGDFKLGHYM KIPPRSMFTVQVVGTVLSVIVYLVTAWWMMGSIPNLCDQEKLPSDSPWTCPMDTVFFDASVIWGLVGPRRIFGDLGEYGNVNWFFLGGAVAPFLVWLAHR AFPSQRHWIRYINMPVLLGATSMMPPASAVNFTSWIAVGFLSGFVMFRWRPKWWNRYNYVMSGGLDAGTAFMTILIFFCLQNRNVGIDWWGTRPDGCPLA HCPTAPGVAVDGCPIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10007770 [exp]	0	1
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10029022 [exp]	9.2	0.6936
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	10.2	0.7245
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	17.7	0.6138
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034502 [exp]	19.8	0.7012
					Lus10015798 [exp]	21.8	0.6720
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10000534 [exp]	24.7	0.6632
AT4G23350			Protein of Unknown Function (D...		Lus10042273 [exp]	27.8	0.6626
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006917 [exp]	34.9	0.6621
AT5G16740			Transmembrane amino acid trans...		Lus10035738 [exp]	35.6	0.6558
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	37.2	0.6598

Compare expression of checked genes

Lus10007770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.