Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61470 169 / 6e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 169 / 3e-50 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 163 / 3e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G10960 157 / 3e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 156 / 6e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 153 / 6e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 151 / 9e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G15920 149 / 6e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44260 144 / 3e-41 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 144 / 2e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042746 [exp] 389 / 1e-136 AT5G10960 150 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029710 [exp] 369 / 1e-128 AT5G10960 147 / 2e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029713 [exp] 368 / 3e-128 AT5G10960 144 / 4e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 248 / 5e-81 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 243 / 8e-79 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 237 / 1e-75 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 234 / 2e-75 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 234 / 3e-75 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 228 / 3e-73 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 214 / 4e-68 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 160 / 3e-47 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 159 / 1e-46 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 157 / 4e-46 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 151 / 5e-44 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 144 / 3e-41 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 142 / 2e-40 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 136 / 4e-38 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 132 / 1e-36 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 128 / 8e-35 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10007771 pacid=23165878 polypeptide=Lus10007771 locus=Lus10007771.g ID=Lus10007771.BGIv1.0 annot-version=v1.0 ATGGATCCACACATTCGCCAAGTCTGGAACTGGAATCTCCTGCCAGAGCTTGTAATCTTGGAACAAGCCCTTGGAAGCTACCCAATACTGAGTGTCGATT GCGAGTTCCCTGGATTCCTGCGTCAAACGCCAAGAAATGCCACTGACACTCTCCGTTACGGTGACCTAAAACACAATGTGGACAGAACTCATATCATTCA ACTCGGAGCCACTCTCTCCGACCACCACCGCATATTCGGAACTTGGCAATTCAATTTCGAGTTTGATCTCGGCAAAGATGTGCACACCAAAGAGACAGCC GCTTTCTTGAAGGGTCACGGACTTGATTTCGAAAGCCACAAATCAGATGGTATCAAGAGGGCTCAATTCGCTGCTCAATTCTGCAGCATGTTGTCTCGCA GAACACAACCTCTGAAATGGGTCACCTTCCATGGCCTCTATGATTTCGCCCATATCATGAAGATGCTTCTCAACGACACACCATTGCCTGGCATGTCTTC CGGATTTAGAGACTTGTTGGGATGTTTGTTCGAGGAGATTGTCGATCTCAAGGTGATGGCCAAGTTCTGCGATGGCATTTCTGAAATGGAGGTTGGGTTG CAAAAGCTGGCAGATTTGTTGAGCGTGAAGAGAGAGGGTGAAGCACATCAAGCTGGCTCTGATAGTTTGCTCACAGCATTGGTGTTTGTCAACATGAGAG CAAGATTCCACCAACTTCAACAACATCTGTTTACTGATTACCTCTATGGAATCACTGAAAAGATTGGAAGGAAGCCAACCCCATCCTTTAGAGCTCATCA CTACTCCTCCCGCCAATGGTTGTGCCACCAGCCGATGCCACTGCTCGTTCCGTGCTATCGTGCTTATCCTCCTCCTGCTGCTCAGTGTTTTGTTCTTCCC CTGCATACCCCTTTCAGAATGCGTCAGTACTGA
AA sequence Show only first row Show all	>Lus10007771 pacid=23165878 polypeptide=Lus10007771 locus=Lus10007771.g ID=Lus10007771.BGIv1.0 annot-version=v1.0 MDPHIRQVWNWNLLPELVILEQALGSYPILSVDCEFPGFLRQTPRNATDTLRYGDLKHNVDRTHIIQLGATLSDHHRIFGTWQFNFEFDLGKDVHTKETA AFLKGHGLDFESHKSDGIKRAQFAAQFCSMLSRRTQPLKWVTFHGLYDFAHIMKMLLNDTPLPGMSSGFRDLLGCLFEEIVDLKVMAKFCDGISEMEVGL QKLADLLSVKREGEAHQAGSDSLLTALVFVNMRARFHQLQQHLFTDYLYGITEKIGRKPTPSFRAHHYSSRQWLCHQPMPLLVPCYRAYPPPAAQCFVLP LHTPFRMRQY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61470			Polynucleotidyl transferase, r...		Lus10007771 [exp]	0	1
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	3.2	0.8233
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	4.9	0.8096
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	9.5	0.7940
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10006516 [exp]	10.1	0.7960
					Lus10011007 [exp]	21.1	0.8088
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	21.4	0.7355
AT1G32730			unknown protein		Lus10040132 [exp]	21.6	0.8008
					Lus10019128 [exp]	21.8	0.7516
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	23.4	0.7592
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	26.3	0.7973

Compare expression of checked genes

Lus10007771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.