Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 261 / 1e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 260 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 255 / 4e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 249 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 248 / 1e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 246 / 2e-73 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G08070 243 / 2e-72 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 245 / 3e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 243 / 8e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 241 / 4e-71 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000213 [exp] 733 / 0 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022368 [exp] 505 / 3e-169 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 259 / 3e-79 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014594 [exp] 261 / 5e-79 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 252 / 4e-76 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 254 / 6e-76 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 259 / 7e-76 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 259 / 8e-76 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039117 [exp] 245 / 1e-73 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018800 [exp] 561 / 0 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 273 / 9e-84 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G091600 [exp] 266 / 1e-81 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 262 / 5e-79 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 260 / 1e-77 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 251 / 7e-77 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G258500 [exp] 252 / 6e-75 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G074700 [exp] 249 / 7e-75 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 253 / 2e-74 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 249 / 7e-74 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007772 pacid=23165873 polypeptide=Lus10007772 locus=Lus10007772.g ID=Lus10007772.BGIv1.0 annot-version=v1.0 ATGGTTAAACAGTCTCCCTCCTCATCTCCAGGGAGAAACGGCTACCTATGCCCAGCTGGTCGAATCCATGTCTCTCACATCATCCCTCCCGCCTCCGCAA ATCTTGGCAAACCACGCAGCCAACGAATCACTCCAAATGTCTACTCCCTTACCAAAAGATGCAGAGATATGGCAAGTGCATACAAAATTTTCATCGAGTA TTCCGGAAGAAATTCCATCTCTTATAACACAATGATTGTTGGTTATTGCGAGAGTGGTAACGTTTCCAAGGCCAAGGAGCTCTTTGATCTGATGGGGGTT AGGGGCATTGAAAGAGATTTAATTTCCTGGAATTCCATGATTTCAGGATATGTTGATAATCTCCTGTATTCCAACGCTCTGAGTATGTTTAGGAATTTGA TGAGGTCAGGAAAAATCGAACCAGATTCTTTTACATTAGGAAGTGCTCTTGCTGCTTTTGCTGACATAGTTTCTCTAAAGCAGGGCAAGGAGATTCATTC CATTGCAATTGCCAGAGGCTTGCAATCTAATACATTTGTTGGAGGAGCTCTGGTGGAAATGTACTGTAAATGTCAGGACTTAGTGGCTGCCCAGTTGGCT TTTGATGAGGTCGTTGAGAAGGACGTTTCCACATGGAACGCTTTGATATCAGAATACGCGAGATTAAACGAGACTGAAGAAGTCCGAACTTTGCTTCGGG AAATGAAAGATGATGGTTTCGAACCAAATTCATACACGTGGAATGGCATTCTTGCAGGGAAACAAGTGCATGCTCACTCGATTAGAAGGAGGTATGATTC TGATGTTCTTATAGGAGCTGCTCTTGTAGATATGTATTCTAAATGTGCGAGCATCAAAAGGAATGGCATTGTTCAAAGAATTCTTGCTACTGGGTGCCAA CCAGATGAGGTGACTTTCTTATCAGCACTTTCTTCATGCGTTCACGCTGGATCGATCGAGACAGGCTGTGAATTCTTCAAGTTGATTGGGTTTTATAACT TGAAGCCTACGTTAAAACACTTCACGGCTATGGTTGATCTTTTAAGTCGTTCAGGGAAGCTTATAGAAGCATATGAGGTAATCCGGACGATGCCAATGAA ACCCGATTCAGTTCTATTGGGAGCTTTGCTTGGAGGGTGTGTGGTTCATGGTAATGTTGAGTTGGGAGAAATTGCTGCAAACAAGCTGATGGAGTTAGAA CCGGACCAAACTGGGAATTATGTGTTGCTTGCTAATTTGTATGCTTATTCGGGAAGATGGTCGGATTTGGGCAGAACAAGTAATATGATGAAGGAGAGAG GGTTGCAGAAGAGCCCAGGATGTAGTTGGATTGAGGACAGAGATGGGATCAATGCGTTCATTCCTTGCGATACGTCCCATAAGAGAACAACAGATATCTA CGCTACTTTAGATCACTTGATCCTTCACATGAGAACTGGGTTATTGGTAGCTTAG
AA sequence Show only first row Show all	>Lus10007772 pacid=23165873 polypeptide=Lus10007772 locus=Lus10007772.g ID=Lus10007772.BGIv1.0 annot-version=v1.0 MVKQSPSSSPGRNGYLCPAGRIHVSHIIPPASANLGKPRSQRITPNVYSLTKRCRDMASAYKIFIEYSGRNSISYNTMIVGYCESGNVSKAKELFDLMGV RGIERDLISWNSMISGYVDNLLYSNALSMFRNLMRSGKIEPDSFTLGSALAAFADIVSLKQGKEIHSIAIARGLQSNTFVGGALVEMYCKCQDLVAAQLA FDEVVEKDVSTWNALISEYARLNETEEVRTLLREMKDDGFEPNSYTWNGILAGKQVHAHSIRRRYDSDVLIGAALVDMYSKCASIKRNGIVQRILATGCQ PDEVTFLSALSSCVHAGSIETGCEFFKLIGFYNLKPTLKHFTAMVDLLSRSGKLIEAYEVIRTMPMKPDSVLLGALLGGCVVHGNVELGEIAANKLMELE PDQTGNYVLLANLYAYSGRWSDLGRTSNMMKERGLQKSPGCSWIEDRDGINAFIPCDTSHKRTTDIYATLDHLILHMRTGLLVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10007772 [exp]	0	1
AT5G02710			unknown protein		Lus10003988 [exp]	9.7	0.8428
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	10.1	0.8924
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	12.4	0.8732
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	12.8	0.8749
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	17.0	0.8413
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10039653 [exp]	20.7	0.8366
AT5G02710			unknown protein		Lus10015040 [exp]	22.6	0.7956
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10035307 [exp]	28.0	0.8380
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	31.7	0.7982
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	34.6	0.8441

Compare expression of checked genes

Lus10007772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.