Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37590 113 / 2e-29 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G60200 110 / 6e-29 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G28810 111 / 1e-28 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G45610 109 / 1e-28 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 109 / 8e-28 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G02460 108 / 4e-27 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 105 / 2e-26 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 103 / 7e-26 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT1G51700 101 / 7e-26 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT2G46590 103 / 1e-25 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022373 [exp] 235 / 6e-78 AT5G60200 116 / 7e-32 TARGET OF MONOPTEROS 6 (.1) Lus10029458 [exp] 109 / 9e-28 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10042114 [exp] 103 / 1e-27 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10005956 [exp] 108 / 3e-27 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 108 / 4e-27 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10016566 [exp] 107 / 8e-27 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10040305 [exp] 107 / 2e-26 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10002381 [exp] 105 / 4e-26 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10012619 [exp] 105 / 4e-26 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G029500 [exp] 110 / 2e-28 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 110 / 3e-28 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.001G238400 [exp] 109 / 7e-28 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.003G144500 [exp] 108 / 8e-28 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 109 / 1e-27 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G084200 [exp] 108 / 1e-27 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.001G086400 [exp] 107 / 2e-27 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 106 / 4e-27 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 106 / 4e-27 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.008G055100 [exp] 107 / 9e-27 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10007774 pacid=23165877 polypeptide=Lus10007774 locus=Lus10007774.g ID=Lus10007774.BGIv1.0 annot-version=v1.0 ATGGTTAAGAAGTATCCTAACAGGCAGGACAAAAAGGATGGGATTGTTGTTGGTAGTGAAGAAGCCCTTTCCTACTACGCCGCCACCCCACCGCCGCCGC CTCATGCAACGGCAGCGGCGCAAAGCAGGAAAGCGGTGTTGTCGGCGGCGCCGCCAGAAGCCGTAATCAAGTGCCCGCGTTGCCAATCGAGCAACACCAA GTTCTGCTACTACAATAACTACAGTTTGACCCAGCCAAGGTACTTTTGCAAGACCTGCCGCCGCTACTGGACTCGAGGCGGCGCCCTCCGCGACGTTCCC ATCGGCGGCGGCTCCCGTAAGTCCGCTGCCTCCAAACACTCTTCTTCTTCCGCTGATCGCTCCCTTCTTCCCGCCGCTTCAAAGAAGCAGCTCGTCACGA CCACGGCTGACGTGGCAGGACAAGATCAGAACTTGGCTTACAATCCGCCACCTCGGGCAGCATACAAGTTTAGTGAAGTGGTTTATCAATTCCTGAACCC TAACTACTACTCTATGGTCCCACTCCTTCCTAATCATAATAATGGTGACGGTGGAAGAGGAGATGAGTTGGGAATGATGAAGCCGCCGCCGCCAGCACTT TGTTATCCGCCTTTCCATGGTGGTGGCTTTGAGATTCGAGATGAAGATGATGATCACGAGGAGAGTGATGTGGGGTGTAATGAAGAAAGGGTGTTGTTCC CCATTCACGATTATGTGAAGCCAGCTGTAACCATTAATGGTGCCACGGTGGCGCCGGCGGGTACTAGTACTACTACGGCTGCTGAGTTCTGGAATGGTGT GTTCGGTGGAGGAGGAGGCGGAGGGTCGACGTGGTGA
AA sequence Show only first row Show all	>Lus10007774 pacid=23165877 polypeptide=Lus10007774 locus=Lus10007774.g ID=Lus10007774.BGIv1.0 annot-version=v1.0 MVKKYPNRQDKKDGIVVGSEEALSYYAATPPPPPHATAAAQSRKAVLSAAPPEAVIKCPRCQSSNTKFCYYNNYSLTQPRYFCKTCRRYWTRGGALRDVP IGGGSRKSAASKHSSSSADRSLLPAASKKQLVTTTADVAGQDQNLAYNPPPRAAYKFSEVVYQFLNPNYYSMVPLLPNHNNGDGGRGDELGMMKPPPPAL CYPPFHGGGFEIRDEDDDHEESDVGCNEERVLFPIHDYVKPAVTINGATVAPAGTSTTTAAEFWNGVFGGGGGGGSTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	0	1
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	2.4	0.9137
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	3.5	0.8958
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	3.5	0.8996
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	5.9	0.8846
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	5.9	0.8937
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	6.0	0.8985
AT3G50140			Plant protein of unknown funct...		Lus10037762 [exp]	6.9	0.8626
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	8.4	0.8684
AT3G27390			unknown protein		Lus10032110 [exp]	8.5	0.8753
AT3G54390	Trihelix		sequence-specific DNA binding ...		Lus10024143 [exp]	8.5	0.8889

Compare expression of checked genes

Lus10007774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.