Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78060 725 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 556 / 0 Glycosyl hydrolase family protein (.1) AT5G09730 519 / 2e-177 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G64570 515 / 8e-176 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT1G02640 501 / 1e-170 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT3G19620 494 / 1e-167 Glycosyl hydrolase family protein (.1) AT5G49360 470 / 2e-158 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G09700 454 / 2e-155 Glycosyl hydrolase family protein (.1) AT3G47010 107 / 3e-24 Glycosyl hydrolase family protein (.1.2) AT3G47050 105 / 1e-23 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022374 [exp] 1082 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 718 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 532 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10020966 [exp] 509 / 2e-173 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10016858 [exp] 490 / 2e-167 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10010015 [exp] 489 / 1e-165 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10019240 [exp] 302 / 5e-96 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10010657 [exp] 96 / 1e-20 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10043457 [exp] 91 / 7e-19 AT5G20950 809 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094000 [exp] 860 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 852 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 793 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 729 / 0 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G089100 [exp] 551 / 0 AT5G10560 988 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G206800 [exp] 523 / 5e-179 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.002G197200 [exp] 517 / 1e-176 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 508 / 2e-173 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.003G022900 [exp] 508 / 6e-173 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.010G141400 [exp] 504 / 2e-171 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007775 pacid=23165889 polypeptide=Lus10007775 locus=Lus10007775.g ID=Lus10007775.BGIv1.0 annot-version=v1.0 ATGGCGGACACTTATCAGCCACCATTCCACAGCTGCGTCAAAGAAGGAAAAGCCAGTGGGATAATGTGTGCATACAACAGAGTTAATGGGGTTCCAAGCT GTGCTGATTACAATCTTCTTTCAAAAACTGTCAGAGCCGAATGGGGTTTTCATGGGTACATCACATCTGACTGTGATGCTGTTTCTATCATTCATGATGC TCAAGGCTATGCTAAGCAGCCAGAGGATGCTGTTGCCGACGTTCTTAAAGCAGGTATGGACATGGATTGTGGATTATACTTGCAGCAGCACAGCAAAACA GCAGTTGAGCAAGGGAAACTTTTGGTGTCACAAATCGATAGAGCTCTCCACAACCTCTTTGCGTTGAGAATGAGGTTAGGACTTTTCAATGGGGATCCAA AGGAACAAGTTTTTGGCAACATTGGTCCCGACCAAGTTTGTTCTCAAGAGCATCAGATGCTGGCACTTGAAGTTGCTCGCAATGGCATTGTTCTTTTGAA GAACTCGGGGAGACTTCTCCCTCTTCACAAGTCTGAATCCGGGTCCATTGCTGTGATCGGGCCGAATGCAAATCCCGGTCGAACTCTTCTTGGAAACTAT GCAGGTCCTCCATGCACATTGATCACACCATTGCAGGGACTTCAGGCTTATGTCAAGGATACCACTTACATCCAGGGCTGCGAGAATGTTCAGTGCTCGT CTGCTGATATTGAACAAGCAGTGAAAACAGCACAAGGTGCGGATCATGTGATACTTGTAATGGGATTGGATCAAACACAAGAGAGAGAAGAGCTCGATCG TGTGGATTTAGTACTTCCTGGGATGCAACAGGAACTCATAACCAGGGTCGCTAGAGCTGCAAAGAATCCTGTTGTTCTCGTGCTCCTTTCTGGAGGTCCA ATTGATGTATCTTTTGCCAAGTACGATAAGAAAATAGGAAGCATTTTGTGGGCGGGTTATCCTGGTCAAGCTGGTGGGACTGCATTGGCAGAAATTATCT TTGGTGATCACAATCCAGGTGGAAGGCTGCCAGTTACTTGGTATCCTCAGGAGTTCGTCAAGGTACCAATGACAGACATGAGGATGCGACCCGAATCATC TTCGAGTTATCCAGGTCGAACATACAGATTCTACAAAGGCCAGAGTGTGTTCGAGTTTGGCCATGGCCTCAGCTACTCCAAGTACTCGTACGAGCTGAAG CACGTATTGCATGACAAGCTCTACTTAAACCAGTCGTCCTCCATGTCAGTGCACACAGTTGACAAAACAGATTCGATTCGGTCGATTCTAGTGTCTAACT TAGGGGCGGAGTTCTGCAAGGGAAGCGAATTCGCGGTGAGAGTTGGGGTGGAGAACCAAGGTGAGATGGCTGGGAAGCATCCTGTGCTTCTGTTTTCAAG GCAGGGAAAGCATGGAAATGGAAGGCCAAGGAAACAGTTGGTTGGATTCAAGAGTGTGGTACTAAATGCAGGAGAAAAGGGTGAGGTTGAGTTCTTAGTC AGCCCTTGTGAGCATCTCAGCAGAGCTAATGAAGATGGTGTTATGGTCATTGAAGAAGGAACACATTTCTTGGCTGTAGGAGGTGACCAGCACCCAATTG ATGTGATGTTATGA
AA sequence Show only first row Show all	>Lus10007775 pacid=23165889 polypeptide=Lus10007775 locus=Lus10007775.g ID=Lus10007775.BGIv1.0 annot-version=v1.0 MADTYQPPFHSCVKEGKASGIMCAYNRVNGVPSCADYNLLSKTVRAEWGFHGYITSDCDAVSIIHDAQGYAKQPEDAVADVLKAGMDMDCGLYLQQHSKT AVEQGKLLVSQIDRALHNLFALRMRLGLFNGDPKEQVFGNIGPDQVCSQEHQMLALEVARNGIVLLKNSGRLLPLHKSESGSIAVIGPNANPGRTLLGNY AGPPCTLITPLQGLQAYVKDTTYIQGCENVQCSSADIEQAVKTAQGADHVILVMGLDQTQEREELDRVDLVLPGMQQELITRVARAAKNPVVLVLLSGGP IDVSFAKYDKKIGSILWAGYPGQAGGTALAEIIFGDHNPGGRLPVTWYPQEFVKVPMTDMRMRPESSSSYPGRTYRFYKGQSVFEFGHGLSYSKYSYELK HVLHDKLYLNQSSSMSVHTVDKTDSIRSILVSNLGAEFCKGSEFAVRVGVENQGEMAGKHPVLLFSRQGKHGNGRPRKQLVGFKSVVLNAGEKGEVEFLV SPCEHLSRANEDGVMVIEEGTHFLAVGGDQHPIDVML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	1.0	0.9423
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	2.0	0.9201
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	2.4	0.9180
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	5.2	0.8944
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	7.7	0.9104
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	8.1	0.9084
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	8.5	0.9160
AT1G09870			histidine acid phosphatase fam...		Lus10040951 [exp]	9.6	0.8616
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	11.7	0.8794
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	13.0	0.8850

Compare expression of checked genes

Lus10007775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.