Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039450 [exp] 57 / 1e-10 ND / Lus10038660 [exp] 48 / 4e-07 AT5G36228 38 / 0.002 nucleic acid binding;zinc ion binding (.1) Lus10035109 [exp] 41 / 0.0003 AT4G24190 309 / 5e-98 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10005196 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007776 pacid=23165883 polypeptide=Lus10007776 locus=Lus10007776.g ID=Lus10007776.BGIv1.0 annot-version=v1.0 ATGGCACCCGATGGACCCATGAAATCAAATCCTTTTGTTGAGATTACCGTTGTCGATCCCCTAATCCCTGGCTTCCTCCTTGAAATCCCTAAAGCGCCGG ACGAGAAGGTCATTTTCCGCTACGATCATTTGATTGAAGTTTGCAAGTTCTACGGGCGCATTGGCGACAACCTTGAGGATTGCCCCGAACGGCGGCTCTC ATTGCACAAGGCTAATCTGGTGATCCCTCAGGCGACTCTGAAAACCTCTATGTGGAAGACTACATTGGCCAAGGGAACAATAGTGGCTCTGACGTTTCCT CCTCCGACTTCAGCCTCCTCCTTCCTGCGTGACTACACACCCCTGGGCTCCAGCTCCACTCAGGCATCCAGCATAACCCAATCAAGACAGCAATCGTTGA TGCTCCAGCTTCCAGTCGCGCGATCTTCCTTCAGACGACACGCTCAGCCTTACAGTGTTTATCTCCGGTTCAGAAGCCACACTTATGAGGTCTGCAGCGT CTGGTATTTATTGACGCCGTGGGTTGCTCTCATCCAACCAAGAAGGTAA
AA sequence Show only first row Show all	>Lus10007776 pacid=23165883 polypeptide=Lus10007776 locus=Lus10007776.g ID=Lus10007776.BGIv1.0 annot-version=v1.0 MAPDGPMKSNPFVEITVVDPLIPGFLLEIPKAPDEKVIFRYDHLIEVCKFYGRIGDNLEDCPERRLSLHKANLVIPQATLKTSMWKTTLAKGTIVALTFP PPTSASSFLRDYTPLGSSSTQASSITQSRQQSLMLQLPVARSSFRRHAQPYSVYLRFRSHTYEVCSVWYLLTPWVALIQPRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007776 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	11.2	0.9047
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	18.0	0.8606
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	25.9	0.8832
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	28.7	0.8828
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000958 [exp]	33.0	0.8379
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	36.7	0.8555
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	38.7	0.8214
					Lus10031880 [exp]	42.0	0.8649
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	46.3	0.8709
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	48.9	0.8483

Compare expression of checked genes

Lus10007776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.