Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017800 [exp] 112 / 1e-32 ND / Lus10003030 [exp] 109 / 1e-30 ND / Lus10042979 [exp] 105 / 8e-27 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10014851 [exp] 100 / 5e-25 ND 34 / 0.005 Lus10026444 [exp] 96 / 1e-23 ND / Lus10027613 [exp] 80 / 8e-18 ND / Lus10006886 [exp] 77 / 9e-17 ND / Lus10023004 [exp] 72 / 8e-16 ND / Lus10039353 [exp] 73 / 2e-15 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007779 pacid=23165872 polypeptide=Lus10007779 locus=Lus10007779.g ID=Lus10007779.BGIv1.0 annot-version=v1.0 ATGCCCAGTCTCATTCTCTGTATTCTCACTTTCAGGTTCTCCAACGTGCCTATCTGTAACCTCCACCCGACTCGCCCTCACCTCTTTGCATTCCTCCCTG TTCCATTCCGCATGTACAGCTACTCAGTTCTGGTTAATTGTGCTGATGCAACGGCAACATCTCAGGTGCTCTTTATTGGCACAGCGGCAAAACTCCTGTT CCAAATGCCACTTGAGGAATATGTTGCATTAACACCATATGCTGCCCGGACCCTAATGCTTACTCTCCATAGTCGTATGTTCATTGTTGAGGTCCGCACC CTTGACCCTGGGCATACAGACCAAGCCAAATTCATCGCCGCAATTATATGGGACCCCGTGGTTGCTTTCTATCGTTTGTGTTCCCTATCATTATGTATGC AGCCGCGCACGTTTTACTCTCTACCCTTCTCACTACCTCCATTTCTGTTTCATGATGTTTTGATTGGACCTACCCTGAACCTACAGTATACATGA
AA sequence Show only first row Show all	>Lus10007779 pacid=23165872 polypeptide=Lus10007779 locus=Lus10007779.g ID=Lus10007779.BGIv1.0 annot-version=v1.0 MPSLILCILTFRFSNVPICNLHPTRPHLFAFLPVPFRMYSYSVLVNCADATATSQVLFIGTAAKLLFQMPLEEYVALTPYAARTLMLTLHSRMFIVEVRT LDPGHTDQAKFIAAIIWDPVVAFYRLCSLSLCMQPRTFYSLPFSLPPFLFHDVLIGPTLNLQYT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007779 [exp]	0	1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10003334 [exp]	3.9	0.8318
					Lus10026794 [exp]	4.9	0.8087
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	5.2	0.8479
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	9.8	0.8356
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	16.4	0.7973
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	18.0	0.7973
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	19.4	0.7973
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	20.8	0.7973
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	22.0	0.7973
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	24.6	0.7838

Compare expression of checked genes

Lus10007779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.