Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24330 386 / 1e-135 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G09790 350 / 4e-121 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT4G30860 46 / 1e-05 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT3G59960 45 / 2e-05 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT2G44150 44 / 7e-05 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016526 [exp] 433 / 4e-155 AT5G24330 388 / 4e-136 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040794 [exp] 240 / 3e-81 AT5G24330 221 / 5e-73 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040793 [exp] 77 / 4e-18 AT5G24330 67 / 3e-15 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10038740 [exp] 50 / 5e-07 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10039118 [exp] 47 / 7e-06 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 47 / 1e-05 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009632 [exp] 437 / 5e-156 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 437 / 5e-156 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G058000 [exp] 360 / 4e-125 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G109900 [exp] 359 / 1e-124 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G147200 [exp] 50 / 8e-07 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 49 / 2e-06 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G182100 [exp] 45 / 5e-05 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 43 / 0.0002 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.018G102100 [exp] 40 / 0.001 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10007782 pacid=23165881 polypeptide=Lus10007782 locus=Lus10007782.g ID=Lus10007782.BGIv1.0 annot-version=v1.0 ATGGATGTTAAGATTTCATTCCCTCTTGTGCAAACGAAAATCGTAGATTTCTTCCGCATCCAGAAGCCTTCAAAACCCAGAAAGAAACCAAGTGAAGACA CCCCAAAGAAGCGTAAAAGAGCAGGAAGCTTAGTTATGTCGAAAAAGAAGAGGAAGCTACTGCCTTTCAACCCAAGCGAGGACCTTAACCAGCGGCTGGA ACAGATGAGATCACTGGCAACAGCATTGCTAGCCTCTGGAACAAGGTTTTCTGATGATCTCACTTATAGACGGGGGATGGCACCTCGATCAGCGAATAGC ACTTCTCTTGAAAAGGGTGGCATGCAGGTGTTGTCGAAAGAAGATACGGAAACCTTAAATCTTTGCAAGAGAATGATGGATAGAGGAGAGTGCCCACCGC TAATGGTCGTTTTCGATCCTCTGGAAGGGTTCACAGTTGAAGCAGATAGATGCATAAAAGACTTGACCATTGTAACAGAATATGTTGGTGATGTTGACTA CTTGGAGAAACGAGAAAACGACGACGGTGACAGCATGATGACACTGCTTTCGGCTACCGATCCGGCTAAAAGCCTCGTCATATGCCCTTATAAGCACGGA AATGTAGCTCGATTTATCAACGGGATCAACAATCACACCCCGGAGGGAAAGAGGAAACAGAACCTAAAATGCGTAAGGTATGATGTTGATGGTGAGTGCC GGGTTTTGCTGATTGCGAACCGAGATATACGGAAGGGAGAGAGACTATACTACGATTATAACGGGTATGAGCATGAGTATCCAACTGAGCACTTTGTTTA A
AA sequence Show only first row Show all	>Lus10007782 pacid=23165881 polypeptide=Lus10007782 locus=Lus10007782.g ID=Lus10007782.BGIv1.0 annot-version=v1.0 MDVKISFPLVQTKIVDFFRIQKPSKPRKKPSEDTPKKRKRAGSLVMSKKKRKLLPFNPSEDLNQRLEQMRSLATALLASGTRFSDDLTYRRGMAPRSANS TSLEKGGMQVLSKEDTETLNLCKRMMDRGECPPLMVVFDPLEGFTVEADRCIKDLTIVTEYVGDVDYLEKRENDDGDSMMTLLSATDPAKSLVICPYKHG NVARFINGINNHTPEGKRKQNLKCVRYDVDGECRVLLIANRDIRKGERLYYDYNGYEHEYPTEHFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10007782 [exp]	0	1
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	4.8	0.9386
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	5.1	0.9363
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	8.1	0.9325
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	13.0	0.9327
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	16.9	0.9360
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	18.5	0.9314
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	20.5	0.9141
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	23.0	0.9192
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	23.3	0.9148
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	23.7	0.9322

Compare expression of checked genes

Lus10007782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.