Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53500 226 / 6e-66 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 226 / 1e-65 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G64610 172 / 3e-46 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 167 / 3e-44 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 132 / 2e-32 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 123 / 2e-29 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 104 / 2e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 95 / 3e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 84 / 1e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49180 44 / 0.0002 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022377 [exp] 627 / 0 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 221 / 2e-63 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 219 / 1e-62 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 131 / 4e-32 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 126 / 2e-30 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10027671 [exp] 113 / 5e-26 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 112 / 6e-26 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020846 [exp] 99 / 9e-22 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 98 / 4e-21 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009700 [exp] 362 / 1e-116 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 332 / 3e-105 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 223 / 6e-64 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 218 / 2e-62 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 203 / 6e-57 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 130 / 8e-32 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 129 / 4e-31 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 128 / 4e-31 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 126 / 1e-30 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 105 / 2e-23 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10007783 pacid=23165886 polypeptide=Lus10007783 locus=Lus10007783.g ID=Lus10007783.BGIv1.0 annot-version=v1.0 ATGGGTAGCTTGAGCGAAGAAGAACTTGGGTTCTTCGATGCAGCTGACGACATTGCATCGACAAGTGACACATTAGATAATAATTCAGCTGCCACTAGTC CTCATTATGATCTGTGGGTTGACGTCCCCAAAAGTGTGGAGGAAAGGCGAAACAGGTTCTTCAAATGGATGGAAGTAGGTTCATCTCCAAGCCATCCTGG AGATTCATTGATGGAAGATGGTGGGGTTATTAGTAGAGTTACTGAAAGCAGTGGTGCTGTGTTGAGAAACTCTTGTTTCGAACCAGACTTTTGCTCGATA AGGTCTTCGAAGCTAAGTTGGTCCTACGATAATTCAGGCGAACAGTTCGTGGGCAGAGATGGTGGAGAGATGACATCTAATGTAGAGTATCAACGTGGGA GGATTAGTGAAAGTCGTAGGCTATACTCATGTCCAGCTCGAACTTGGGAGTCTATGAATGTTTCTGGCTCATCATCCCCTTCAGTTCAGCAAAATGCCAC AAAGCCGGGTAAAAAACGGTGGCTGAGCAGATTGCGGTCCATGGCGTGTGCTGTAGATGTCAGAACCGATGCCGAAAGGTTAAACCACGCGGTGGATGAT TCGCTTTTGTACAGAGTACACAGGGTGAAAGTTCGTCAATCTGGAAAGCGGATAAAGGAGCTTTCAGCTCTTTACAGTGGGCAAGATATCCAAGCTCACA GGGGCTCCATTTTGACAATGAAGTTCAGTCCAGATGGGCATTACCTGGCTAGTGCTGGCGAAGATGGAGTGGTGCGTGTGTGGCAAATCGTTGAGGACGA TCGATCAGTTGAACGTGACATTCCGGAAATAGATCCTTCCTGTGTTTACTTTACCGTGAACAATTTGTCTGAGCTGAAACCACTCATCAGTAACAGAGAA AAGACGGCTAAATTGAGGAGTCTGAGGAAAACATCAGATTCATCTTGTGTTATTTTCCCTCCCAAGGTTTTCCGAATAATGGAGGAACCATTGCATGAGT TCCTTGGGCACGGTGGTGATATCTTGGACATATCATGGTCGAAGGATAATGGATTGGTTGTTGGCTCTATGACAGGCACTTGCCGCTTTTATAGCCGGTC AGGCTTGAGAAACACTGCAAACTACGTAACTGCTCGTTTTACTTCAGACGGAAGGCATATAATATCAGCCTGTGAGGATTCCAATGTGTACATGTGGGAT AGTTATGGCCTAGAAGAGTCGTCATCATTCAATGCTAAAAACATCAAGTCTTGTGAGAGGTTCTCTGTTGATGCATCTGTTTCATTAACTTGGTCTGGCT TCAAGCATTTTGGGAACTCAGAAAACGGGCATGGTGTGCCGCCTTTCCCACGTGATAGTAGTACCACAGGGACAACTTTTCCATTTTCTTCTTCACCTGC CAGTTTCAATTTGGGTCAAGAATACTTCCTTGAGTCTTACCCCAAGGGTTCTGCAACTTGGCCAGAGGAAAAGCTTCCAAGAACAAGGTCGTCAACCTCC TCGCCATTGTCGATCCATAAATCACAGTACAAATTTCTGAAAACATCATGTCAGAGCAGTGCAGGTTCTCATGCATGGGGTCTGGTCATTGTCACAGCAG GCTGGGATGGTAGAATTCGTTCTTTCCATAATTACGGTCTGCCCGTTCCTGTCTAA
AA sequence Show only first row Show all	>Lus10007783 pacid=23165886 polypeptide=Lus10007783 locus=Lus10007783.g ID=Lus10007783.BGIv1.0 annot-version=v1.0 MGSLSEEELGFFDAADDIASTSDTLDNNSAATSPHYDLWVDVPKSVEERRNRFFKWMEVGSSPSHPGDSLMEDGGVISRVTESSGAVLRNSCFEPDFCSI RSSKLSWSYDNSGEQFVGRDGGEMTSNVEYQRGRISESRRLYSCPARTWESMNVSGSSSPSVQQNATKPGKKRWLSRLRSMACAVDVRTDAERLNHAVDD SLLYRVHRVKVRQSGKRIKELSALYSGQDIQAHRGSILTMKFSPDGHYLASAGEDGVVRVWQIVEDDRSVERDIPEIDPSCVYFTVNNLSELKPLISNRE KTAKLRSLRKTSDSSCVIFPPKVFRIMEEPLHEFLGHGGDILDISWSKDNGLVVGSMTGTCRFYSRSGLRNTANYVTARFTSDGRHIISACEDSNVYMWD SYGLEESSSFNAKNIKSCERFSVDASVSLTWSGFKHFGNSENGHGVPPFPRDSSTTGTTFPFSSSPASFNLGQEYFLESYPKGSATWPEEKLPRTRSSTS SPLSIHKSQYKFLKTSCQSSAGSHAWGLVIVTAGWDGRIRSFHNYGLPVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24320			Transducin/WD40 repeat-like su...		Lus10007783 [exp]	0	1
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	2.6	0.8441
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	9.6	0.7770
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	21.6	0.7982
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036138 [exp]	25.5	0.7767
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	37.8	0.7627
AT3G47570			Leucine-rich repeat protein ki...		Lus10038598 [exp]	40.8	0.7679
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040537 [exp]	42.5	0.7700
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	44.1	0.7659
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	44.9	0.7614
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10008825 [exp]	45.8	0.6840

Compare expression of checked genes

Lus10007783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.