Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23710 250 / 2e-82 AtTic22-III translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) AT4G33350 135 / 2e-38 AtTic22-IV translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022378 [exp] 456 / 1e-163 AT3G23710 305 / 2e-103 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) Lus10006487 [exp] 133 / 3e-37 AT4G33350 358 / 2e-125 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Lus10009759 [exp] 122 / 6e-33 AT4G33350 355 / 3e-124 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236000 [exp] 298 / 1e-101 AT3G23710 351 / 7e-122 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) Potri.014G030000 [exp] 136 / 2e-38 AT4G33350 359 / 5e-126 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Potri.002G126800 [exp] 135 / 4e-38 AT4G33350 374 / 7e-132 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04278 [flax] [poplar] Tic22 Tic22-like family
Representative CDS sequence Show only first row Show all	>Lus10007784 pacid=23165879 polypeptide=Lus10007784 locus=Lus10007784.g ID=Lus10007784.BGIv1.0 annot-version=v1.0 ATGACTAGTTCTTCCGACCAACGGCGTCGCCATCTAATAGAATTGGACCTCCGAGATGCCTTCTCCAAGATCCAAACCCATTGCTCTGCCTTCCTTAACA ACTTTTCCCAGCTCCCTCTCTTCAATCCCAACGCCGTATCTTCTTTTCAAACCCACCTCCATTCCCATTTGCACATCAATTCTCCATCTCGCCCTCTCTG GGCTCGGATTCCCTCCGACCCGTCTCTTCTCCAACTCTCTAAACCCCCCTCCGCCACCACTCCACCTCCTTTAACCTCTCAAGCCATCGAGGCACGGTTG GCAGGCGTACCCGTTTATGCCCTCAGCAACTCCCGTGATGAGTTCGTTCTCATCTCCGGAGTTTCTTCTTCCACTCCCAAGTCTCTCGGACTGATGTGCT TCAAGAAAGAGGATGCCGATGCTCTCCTTCTCCAGATGAAGAACATGGACCCTCTCATGCGGAGCGGTGGCTCCAAAGTTGTTGCTGTTGCTTTGAACAA GGTTTTTCAACTAAAAGTCGATGGGGTTTCCTTCAGGTTGATACCGGAGTCTGCTCAAGTCATGAACGCAGTTAACGAGCTGAAAAAAGCTGGGGTTTCT GATGACGGGTTCCCTGGAGTTCCAGTTTTCCAGTCAACGAGTCTGGTGTTGAGAAGCAAAAACAAGAGCTATCGGCCAGTATTCTTTAGAAAGGTTGCTG TGTTTGAAGACGTAATTAAGTCCATGCAGGAGACATCAGGTTCAACGTGGAATGATGTTGTTTTTATCCCTCCTGGGTTTGACGTCTCAACTGGTTCTGC CGTGTTATAG
AA sequence Show only first row Show all	>Lus10007784 pacid=23165879 polypeptide=Lus10007784 locus=Lus10007784.g ID=Lus10007784.BGIv1.0 annot-version=v1.0 MTSSSDQRRRHLIELDLRDAFSKIQTHCSAFLNNFSQLPLFNPNAVSSFQTHLHSHLHINSPSRPLWARIPSDPSLLQLSKPPSATTPPPLTSQAIEARL AGVPVYALSNSRDEFVLISGVSSSTPKSLGLMCFKKEDADALLLQMKNMDPLMRSGGSKVVAVALNKVFQLKVDGVSFRLIPESAQVMNAVNELKKAGVS DDGFPGVPVFQSTSLVLRSKNKSYRPVFFRKVAVFEDVIKSMQETSGSTWNDVVFIPPGFDVSTGSAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10007784 [exp]	0	1
AT2G35470			unknown protein		Lus10035375 [exp]	5.5	0.7241
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	13.5	0.7536
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10039889 [exp]	16.6	0.7329
					Lus10042510 [exp]	43.6	0.7030
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	45.5	0.6913
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10004187 [exp]	51.7	0.6104
AT4G17310			unknown protein		Lus10007477 [exp]	53.7	0.6530
AT4G17310			unknown protein		Lus10028954 [exp]	54.6	0.6053
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	55.4	0.6843
AT5G14230			unknown protein		Lus10041588 [exp]	63.1	0.6434

Compare expression of checked genes

Lus10007784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.