Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007786 [exp] 275 / 3e-88 ND / Lus10018989 [exp] 234 / 5e-67 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10039960 [exp] 172 / 2e-49 ND / Lus10034984 [exp] 168 / 2e-49 ND / Lus10011794 [exp] 176 / 9e-49 ND / Lus10004845 [exp] 162 / 2e-46 ND / Lus10018794 [exp] 120 / 2e-30 ND / Lus10017805 [exp] 114 / 1e-29 ND / Lus10020598 [exp] 115 / 3e-29 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10007787 pacid=23165884 polypeptide=Lus10007787 locus=Lus10007787.g ID=Lus10007787.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAAAGGAAAGAGATCTTGGGAAGGAAGAAACACGCTAAGAAGGTAGGGGACTTTAGCATCGTTTCTGAGATTGGGTTGGATCCTATTCGTG CTACTAATGAGGACGATTTCCAGCCCCAGGGTTTTGAACTATATTATGAGCAAGTTGGTAGCTTCGATGTGGGGGTCAAGGCAGGTAACAATGATGAGAA TGCAACGTCAGTTCTGAACAATGATGGCAAGGATGTCGTGGATGGTGGTACTGTAGTGGTTGATAAGGTAACTAGGCAAGATGCACCATCTGAATTGGGG GCATCTCCCGTTAAGGAGACAATGGAACAGAGTAAGGATGGCAAGGGAAGTGACGATGTTTTTGTACAAGTCGCTGATGAGCTATGGAACAAGAGGTTCG AGCTGGTTCTGAGGGGAATGAACATAGGAAGGGCAGAAAGCAAGCAAGTTGAGGAGGAAGTTAGGGGATATCCAAACATCCCGATTGAGATCGTTGGGCC ATGCACACAAGAATTTATGAAAAGAATTGAAGAAGTGGAGGATTTCCATAACGGCGTTATCTTAGATCCTGGTTTGGCAATTGTAGTACTTCGTTATCTT TGGAACACAGACTTGTCCCCGGATGAGATCATGTACCAATTGGATGACACAGAGTTTAAGCTAACTAAGGAAGATTTCTATAGTTGTGCACCCAACCGTA AGTGGAATCCCGATGAATTCAATGATTTTGCATGGGTTTGCCCTAGGGGCCTGAAGCAGCCAGATGATAAGTGTTGTGGCATATTTGCCATCAACTTCAA CAGGAAGGAATACCTGACTCTGTTTTGTAGAAAGGATGTTGCCGATATCATCGATTACAACTACTGTGAACATATTTTGGAAATCATCAAAGAATCAGGT GTCGGCTTCAAAGGATATGCCAAGATGGACATGAACCTCCTTATGGAACACCGCGTTGGAGTTGTTGCTGATGAATGTGTCCCTAGAGAAAGGCCTACCA TTCGGTACTGGACAAGGAGCGTACTCAAGCACCGTTTCCAAGCGTTTGACCAGATTGGTGGTTTTGAAAATGGTTTCATCATCGACTGGGTTTGGGGTAC CAGAGATGATAATGTTTATGTTTGGTTTATTAGTAAAGATCTGTGTATTGGGAGGGCAAAAGAGCCCAGTAAGGAGCTTGCAACACGTCCTGCCAAGAAG GGTCAACTATCAACTGTTGAAGCAAGGAAATTTCCTCCGTCAACACGTCTAAGAAAGAACGCCCTGCCGGTTGACAAACCGGTTGACAAACCCAGAAAAA TTAAGTCAATCTGCAACACTGGCTGCGACAAAATACTGTCCAATACGCCACGGAGAACTGTTTGGGGAAGATATGGGTTTAGGCATAACATTTGTGGTGT ACCTATACTGTTTTGTGCATTGGTTTTGTGGTGGTTTTTCCCCTTATGTGATGGGGATCACTGGGTGGTGTACTGTGTCAACCTAAGAAAGAAAAGATTT GAATTCCTAGACAGCGTGGACAAGGATGGATTTTTGCCTAATTATGAGAAAATGGGAGCGGAGATTGCGAAATTTGCAAGGAATTTCATTCCAATGGTTC GCAATGAGTGGACTCCTAATGACTTCAATGATTTTGCATGGGTTCATCTTAGGGGCCTAAAGCAGCCAGATAATAAGTGTTGTGGCATATTTTCCATCAA CTTCCTGGAATGCCGGATTGGCGAAGTCGAAGGGTGGATGAAGGATCACTGGATGTCAATGAATACTATCGAGTGCCATTGTTCCGAGGTATGCATGTAG
AA sequence Show only first row Show all	>Lus10007787 pacid=23165884 polypeptide=Lus10007787 locus=Lus10007787.g ID=Lus10007787.BGIv1.0 annot-version=v1.0 MEEQRKEILGRKKHAKKVGDFSIVSEIGLDPIRATNEDDFQPQGFELYYEQVGSFDVGVKAGNNDENATSVLNNDGKDVVDGGTVVVDKVTRQDAPSELG ASPVKETMEQSKDGKGSDDVFVQVADELWNKRFELVLRGMNIGRAESKQVEEEVRGYPNIPIEIVGPCTQEFMKRIEEVEDFHNGVILDPGLAIVVLRYL WNTDLSPDEIMYQLDDTEFKLTKEDFYSCAPNRKWNPDEFNDFAWVCPRGLKQPDDKCCGIFAINFNRKEYLTLFCRKDVADIIDYNYCEHILEIIKESG VGFKGYAKMDMNLLMEHRVGVVADECVPRERPTIRYWTRSVLKHRFQAFDQIGGFENGFIIDWVWGTRDDNVYVWFISKDLCIGRAKEPSKELATRPAKK GQLSTVEARKFPPSTRLRKNALPVDKPVDKPRKIKSICNTGCDKILSNTPRRTVWGRYGFRHNICGVPILFCALVLWWFFPLCDGDHWVVYCVNLRKKRF EFLDSVDKDGFLPNYEKMGAEIAKFARNFIPMVRNEWTPNDFNDFAWVHLRGLKQPDNKCCGIFSINFLECRIGEVEGWMKDHWMSMNTIECHCSEVCM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007787 [exp]	0	1

Compare expression of checked genes

Lus10007787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.