Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53490 300 / 7e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G12250 61 / 4e-11 Pentapeptide repeat-containing protein (.1.2) AT2G44920 45 / 2e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G55000 40 / 0.0007 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024602 [exp] 64 / 9e-12 AT1G12250 354 / 1e-123 Pentapeptide repeat-containing protein (.1.2) Lus10032239 [exp] 62 / 4e-11 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2) Lus10020270 [exp] 50 / 8e-07 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10000520 [exp] 44 / 5e-05 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002622 [exp] 44 / 6e-05 AT5G55000 462 / 1e-165 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10002712 [exp] 42 / 0.0002 AT2G44920 287 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018100 [exp] 330 / 1e-115 AT5G53490 318 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.019G038400 [exp] 44 / 3e-05 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.013G062500 [exp] 43 / 0.0001 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0505 [flax] [poplar] Pentapeptide PF00805 [flax] [poplar] Pentapeptide Pentapeptide repeats (8 copies)
Representative CDS sequence Show only first row Show all	>Lus10007788 pacid=23165882 polypeptide=Lus10007788 locus=Lus10007788.g ID=Lus10007788.BGIv1.0 annot-version=v1.0 ATGGCGACTCTTTCTTTTTCTCTTCCACTTTCCAGAACCACCCCGGGCTCGTCGTCATCGTCAAAGCGAAATCCATTTCAGCCGCATCATTACCCTCGTG CTAAAGTTACTTGTTCTTTCTCTCATAACGGAGCTGGATCAGAATCGGCCGGACCTCCAAGGATTCTTGGTTGGAAAGAAGTGAACTGTGTAGGTTGCGG GTTTCTTGCTGCTCTCGCTGTCACTGCTTCTCCAGTAATTGCTGGAGCTCAGAGGCTACCCCCACTGTCGACAGAGCCCGACAGGTGCGAGAAGGCATAC GTTGGAAACACGATTGGTCAAGCCAACGGCGTATATGATAAGCCAATTGATCTTCGGTTCTGCGATTTCAGTAACGACAAATCCAATCTCAAGGGGAAGT CACTTGCTGCTGCACTAATGTCGGATGCTAAGTTTGATGGTGCTGACATGACAGAAGTCGTCATGTCCAAGGCTTACGCGGTTGGAGCTAGCTTCGTAGG TGTGGACTTCTCAAACGCAGTTTTGGACCGTGTAAACTTTGGGAAGGCCAACCTGAAAGGAGCTGTGTTCAGGAACACTGTGCTGTCAGGGTCAACATTT GAGGAGGCTGAAATGGGAGATGTGGTTTTTGAGGACACCATCATAGGCTACATCGACTTGCAGAAACTGTGTAGAAACACGAGTATCAGTGATGATGGAA GGGCGGAATTGGGATGTAGATGA
AA sequence Show only first row Show all	>Lus10007788 pacid=23165882 polypeptide=Lus10007788 locus=Lus10007788.g ID=Lus10007788.BGIv1.0 annot-version=v1.0 MATLSFSLPLSRTTPGSSSSSKRNPFQPHHYPRAKVTCSFSHNGAGSESAGPPRILGWKEVNCVGCGFLAALAVTASPVIAGAQRLPPLSTEPDRCEKAY VGNTIGQANGVYDKPIDLRFCDFSNDKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFVGVDFSNAVLDRVNFGKANLKGAVFRNTVLSGSTF EEAEMGDVVFEDTIIGYIDLQKLCRNTSISDDGRAELGCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53490			Tetratricopeptide repeat (TPR)...		Lus10007788 [exp]	0	1
AT3G45050			unknown protein		Lus10041331 [exp]	1.0	0.9701
AT5G42765			unknown protein		Lus10032714 [exp]	2.2	0.9530
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	4.5	0.9612
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	5.3	0.9495
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	5.7	0.9608
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	6.0	0.9574
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	7.3	0.9523
AT5G62960			unknown protein		Lus10039964 [exp]	9.9	0.9379
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10030990 [exp]	11.6	0.9389
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	12.0	0.9479

Compare expression of checked genes

Lus10007788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.