Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16650 740 / 0 O-fucosyltransferase family protein (.1) AT4G38390 499 / 4e-172 RHS17 root hair specific 17 (.1) AT1G76270 493 / 1e-169 O-fucosyltransferase family protein (.1) AT1G20550 486 / 5e-167 O-fucosyltransferase family protein (.1) AT1G14970 308 / 2e-97 O-fucosyltransferase family protein (.1) AT2G01480 303 / 7e-96 O-fucosyltransferase family protein (.1) AT2G03280 273 / 2e-85 O-fucosyltransferase family protein (.1.2) AT1G14020 273 / 7e-85 O-fucosyltransferase family protein (.1) AT1G35510 273 / 3e-84 O-fucosyltransferase family protein (.1) AT1G38065 270 / 3e-84 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004729 [exp] 1013 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 913 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 909 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 520 / 8e-180 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 518 / 5e-179 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 501 / 2e-172 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 491 / 2e-168 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 457 / 1e-155 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 306 / 5e-97 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077500 [exp] 808 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 782 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 513 / 3e-177 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 506 / 3e-174 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 505 / 3e-174 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 502 / 7e-173 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 304 / 5e-96 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 299 / 3e-94 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 278 / 4e-87 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 278 / 6e-87 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007792 pacid=23143602 polypeptide=Lus10007792 locus=Lus10007792.g ID=Lus10007792.BGIv1.0 annot-version=v1.0 ATGGGAGTGGGAGCGGCGGCTCAGGTGGAGGCGTCAAGGTTTAGCTCGATTCCGGTGAACCTGGCGCTGTTACAGCAACCAAACGGTAAAGTGAGCGGAG GAGGAAAGGTTCAGAGTAAGAGTAGCTATCATCATCACAAGCAGCATAATGATTGGTGCTGGTGGAAGAGATCCTCTGTAGCGCAGTCGCTGATGCTGCA GCGGAGGAAGATCCGGTGGTCGTTAGTATGCGGGTTGATGCTGTTCGGGCTCGGGATGGTGTCGCTCTTCACCGGACACATGGTCGCCGATCTCGATTGG TACTCTCAGCGGCTCGTCAAGCCGAGCATCTACAACACATTTAACGTGATTCGTCGTGAGCCTGTTGATATATGGAAATCGAAGTACTCGAATATGTTCT ATGGATGCAGCGAAAGAGGCCGTACTTATGCTCCTGCTACGCCTGAACCGACATCAAATGGATATCTTCTTATAGCAGCAAGCGGTGGACTCAACCAAGA AAGAACAGGAATCACGGATGCCGTAGTTGTTGCGAGGTTTCTTAATGCAACACTAGTTGTTCCTGAGTTGGATCACCATTCTTATTGGAAGGATGATAGG CGAGTCACAATTCTGCTCATCTCTAAATTTGATTTTGTTGACATATTCGATGTTGATTGGTTCATCTCTTACCTTGCGAAAGACGTCACAATTGTTAAAA GAGTTCCGGATAAGTTTATGCGATCAATGGATAAGCCTCCGTATACAATGCGGGTGCCAAGGAAGTCCCCGCCGGAGTACTATATGGACCAAGTTCTACC TATATTATTGAGGAGACAAGTTCTGCAGTTCACTAAGTTTGATTATCGGCTTGGCTATGAGCTTGATGAACAACTGCAGAAGCTACGCTGCCGGGTTAAC TATCATGCTCTAAGATTCACAAAACCAATACGTGAAGTTGGTCAACAAATTGTTATGAAGATGAAAACAATGGCGACACGCTATATCGCTATTCACTTGA GGTTCGAACCTGATATGCTGGCGTTCTCCGGATGCTACTTTGGAGGAGGCGACAAAGAGCGATACGAGCTCAGCGAAATAAGGAAAAGATGGGACACATT GCCAGAGCTAAGTCCGGAAGATGAACGAGCGAGAGGGAAATGTCCGCTTACTCCTCACGAAGTAGGACTGATGCTGCGAGCATTGGGGTTCGCTAACGAT ACGTACCTCTTCGTTGCATCTGGAGAAATATACAGGGGAGAAGAAACATTGCGGCCCTTGAAGGAACTATTCCCTAACTTCTACACCAAAGAAATGCTTG CCAACCAAGAGCTCAAGACTTTTCTTCCTTACTCTTCCCGCTTGGCCGCCGTAGACTACATTGTCTGCGACGAGAGTGATGTCTTCGTCACGAACAACAA CGGGAACATGGCAAAGATCCTCACAGGACGAAGGCGGTACGCAGGGCACAAGAGGACCATCCGTCCGAACGCGAAAAAGCTCAGCGCATTGTTCTTAAGA CGGCACAAAATGGACTGGAACACCTTCTCCAAGAAGGTGAAATCATGCCAGAGAGGGTTCATGGGCGAACCGGATGACCCGAAACCCGCTCGAGGCGAGT TTCACGAACACCCTGCATCGTGCATCTGTAAGAAGCCATTCACCGAGGACGACAGTAACCTTAGAGGGCAAGAAGCTTCTTACTCACGTAACAGATCTTC TCTTAACCCAAGGACACGAAGATGA
AA sequence Show only first row Show all	>Lus10007792 pacid=23143602 polypeptide=Lus10007792 locus=Lus10007792.g ID=Lus10007792.BGIv1.0 annot-version=v1.0 MGVGAAAQVEASRFSSIPVNLALLQQPNGKVSGGGKVQSKSSYHHHKQHNDWCWWKRSSVAQSLMLQRRKIRWSLVCGLMLFGLGMVSLFTGHMVADLDW YSQRLVKPSIYNTFNVIRREPVDIWKSKYSNMFYGCSERGRTYAPATPEPTSNGYLLIAASGGLNQERTGITDAVVVARFLNATLVVPELDHHSYWKDDR RVTILLISKFDFVDIFDVDWFISYLAKDVTIVKRVPDKFMRSMDKPPYTMRVPRKSPPEYYMDQVLPILLRRQVLQFTKFDYRLGYELDEQLQKLRCRVN YHALRFTKPIREVGQQIVMKMKTMATRYIAIHLRFEPDMLAFSGCYFGGGDKERYELSEIRKRWDTLPELSPEDERARGKCPLTPHEVGLMLRALGFAND TYLFVASGEIYRGEETLRPLKELFPNFYTKEMLANQELKTFLPYSSRLAAVDYIVCDESDVFVTNNNGNMAKILTGRRRYAGHKRTIRPNAKKLSALFLR RHKMDWNTFSKKVKSCQRGFMGEPDDPKPARGEFHEHPASCICKKPFTEDDSNLRGQEASYSRNRSSLNPRTRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	0	1
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	1.4	0.9007
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	1.7	0.9096
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	2.0	0.8954
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	3.5	0.8955
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	4.9	0.8908
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	5.0	0.8952
AT3G02300			Regulator of chromosome conden...		Lus10013197 [exp]	6.7	0.8796
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	8.1	0.8750
AT3G27390			unknown protein		Lus10032110 [exp]	8.4	0.8789
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	8.8	0.8811

Compare expression of checked genes

Lus10007792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.