Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67530 790 / 0 ATPUB49 plant U-box 49 (.1) AT1G01940 168 / 5e-49 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G36130 140 / 6e-39 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 141 / 2e-35 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT4G33060 125 / 2e-30 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G63400 114 / 4e-27 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT5G13120 109 / 1e-26 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G56070 105 / 3e-26 ROC2 rotamase cyclophilin 2 (.1.2) AT2G15790 107 / 5e-25 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT4G34870 100 / 2e-24 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004731 [exp] 966 / 0 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10009237 [exp] 169 / 5e-49 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 139 / 1e-34 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 139 / 1e-34 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10017010 [exp] 129 / 3e-34 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 127 / 4e-34 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024999 [exp] 127 / 1e-30 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018746 [exp] 118 / 1e-27 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10024831 [exp] 118 / 2e-27 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148900 [exp] 808 / 0 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.002G149700 [exp] 171 / 5e-50 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 168 / 5e-49 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 138 / 4e-38 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 140 / 3e-35 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.018G061700 [exp] 122 / 2e-29 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G106200 [exp] 114 / 2e-27 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.019G014396 [exp] 104 / 1e-25 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.004G144300 [exp] 107 / 3e-25 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 107 / 6e-25 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10007794 pacid=23143612 polypeptide=Lus10007794 locus=Lus10007794.g ID=Lus10007794.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGCAGCACAGCAAGGACCGGATGTTCATAACGAGAACGGAATGGGCGACGGAGTGGGGTGGCGCCAAGTCCAGAGAGCTCCGTACTCCTT TCAAGCGCCTCCCATTCTATTGCTGCGCGCTAACGTTTACGCCCTTTGCCACTCCGGTGTGCACGGCTGACGGAAGCATCTTCGAGATAATGTATATAAT TCCTTATATAGTGAAGTATGGGAAGCATCCGGTTACTACACATGTTGTTCCTAATTGGGATTGTAGCTTGAGCTGGAAGTTTGGCTCAACAGCTCTGAAT AGGTGTAGTGTAATGTTCAAGGCTGTGCTGATTGCACGTAGGGAAAATGAAGAGTTCCATTGTCCGGTGCTCAACAAAGTTTTTACAGAGTTTACACATA TAGTAGCCGTCAAGACTACTGGCAATGTATTTTGCTACGAGGCAGTGAAAGAATTAAATATCAAAACCAAGAACTGGAAGGATCTCCTCACCGATGAACC TTTCACTAGAGATGATCTAATAACACTGCAGAATCCTAATGCTCTCGACTCTAGAGTTACTGTGGAGTTTGACCATGTTAAGAATGACTTGAAGATAGAC GATGAAGAGTTGAAAAAGATGACTTCAGACCCAGCTTATAACATAAACGTAACTGGTGACATCAAGCAAATGCTAGACGAGCTCGGAACTGATAAAGCAA AAGAAGCTGCACTTCATGGAGGTGGTGGTAGCAAGGCAAGAAATGAGAGAGCAGCTGCTCTTGCTGATATTTTGGCTGCAAGATCACGAATCAAAGATAA CGAATCAAAATCGAAATCCAAAGATAAGGCTAAACCGCCAACTGGTTTCAGTGTCGTTGATGCAGCCTCTGCTGCTGTACACGGGAGAAGTGCTGCTGCA GCAAGAGCTTCGTCAACTGATAAGACAGTTGCTCGGATAGCCATGCATCAGGCCGGTGAAAGGGCACCTGTCAATGCTAAGCTGGTGAAGAGTCGTTACA CCACTGGTGCTGCATCTCGATCTTTCACTTCCACTGCTTTCACTCCCGTGACTGAGAACGAGTACGAATATGTCAAGGTCGAGAGGAACCCGAAAAAGAA AGGTTATGTTCAGTTGCATACAACACATGGTGATCTCAACATCGAGCTGCATTGTGATATCACTCCAAGGGCATGTGAGAATTTCTTAACACTCTGTGAA CAAGGCTACTATAACGGAGTGGTATTTCATAGAAGCATACGGAATTTCATGATTCAGGGCGGTGATCCAACAGGTACCGGGAGAGGCGGCGAATCCATAT GGGGCCAACCATTCAACGACGAGCTGAACTCCAAACTGGTCCATTCGGGGAGAGGTGTTGTTAGCATGGCGAATAACGGCCCCCACACGAACGGATCTCA GTTCTTCATACTTTACAAGTCTGCTAATCACTTGAACTTCAAACATACGGTTTTCGGAAACGTTGTTGGTGGGTTGACTGCCTTGGCAGCCATGGAGAAA GTTCCTGTCGACGATGATGACCGACCTCTGGAAGAGATCAAGATAACTAAGGTGACGGTTTTCGTGAATCCCTACACGGAACCTGATGAAGAAGAACAAG AGAAGGCCAAAGCCGAGGAGGAAGCCAACGACGTAGATAAGGACAAGGTTGGTTCGTGGTACAGCAATCCGGGCACAGGGGCGACGGACTCCGAAGCTGG AAATGGTACTGTAGGGAAGTACTTGAAAGCAAGGAATCCTGCTGCTGCACAAATCGAATCGGCTGCTGATCTGAGTAGTGTATCGGTTGGGAAGAAGAGG AAAGTTGGTGGTTCAGCAGTAGAGTTCAAAGACTTCTCTGGTTGGTAG
AA sequence Show only first row Show all	>Lus10007794 pacid=23143612 polypeptide=Lus10007794 locus=Lus10007794.g ID=Lus10007794.BGIv1.0 annot-version=v1.0 MGKKQHSKDRMFITRTEWATEWGGAKSRELRTPFKRLPFYCCALTFTPFATPVCTADGSIFEIMYIIPYIVKYGKHPVTTHVVPNWDCSLSWKFGSTALN RCSVMFKAVLIARRENEEFHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKDLLTDEPFTRDDLITLQNPNALDSRVTVEFDHVKNDLKID DEELKKMTSDPAYNINVTGDIKQMLDELGTDKAKEAALHGGGGSKARNERAAALADILAARSRIKDNESKSKSKDKAKPPTGFSVVDAASAAVHGRSAAA ARASSTDKTVARIAMHQAGERAPVNAKLVKSRYTTGAASRSFTSTAFTPVTENEYEYVKVERNPKKKGYVQLHTTHGDLNIELHCDITPRACENFLTLCE QGYYNGVVFHRSIRNFMIQGGDPTGTGRGGESIWGQPFNDELNSKLVHSGRGVVSMANNGPHTNGSQFFILYKSANHLNFKHTVFGNVVGGLTALAAMEK VPVDDDDRPLEEIKITKVTVFVNPYTEPDEEEQEKAKAEEEANDVDKDKVGSWYSNPGTGATDSEAGNGTVGKYLKARNPAAAQIESAADLSSVSVGKKR KVGGSAVEFKDFSGW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10007794 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10015453 [exp]	3.6	0.8073
AT5G65880			unknown protein		Lus10011719 [exp]	6.4	0.8390
AT4G29400			Protein of unknown function (D...		Lus10012917 [exp]	6.7	0.7781
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	12.7	0.8163
AT3G12760			unknown protein		Lus10009599 [exp]	18.9	0.8009
AT2G30530			unknown protein		Lus10034444 [exp]	21.2	0.7694
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	23.7	0.8306
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011505 [exp]	27.2	0.7478
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	27.7	0.7558
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	28.8	0.7858

Compare expression of checked genes

Lus10007794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.