Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47380 455 / 8e-150 Protein of unknown function, DUF547 (.1) AT5G66600 175 / 5e-46 Protein of unknown function, DUF547 (.1.2.3.4) AT5G56490 163 / 3e-42 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46760 163 / 6e-42 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 157 / 4e-40 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 155 / 2e-39 D-arabinono-1,4-lactone oxidase family protein (.1) AT3G13000 154 / 2e-39 Protein of unknown function, DUF547 (.1.2) AT2G23700 156 / 3e-39 Protein of unknown function, DUF547 (.1) AT2G46740 152 / 1e-38 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G16750 144 / 5e-36 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004732 [exp] 435 / 1e-142 AT5G47380 372 / 5e-122 Protein of unknown function, DUF547 (.1) Lus10004735 [exp] 313 / 6e-96 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10022480 [exp] 188 / 3e-50 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 186 / 1e-49 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10002688 [exp] 173 / 2e-45 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10033328 [exp] 162 / 2e-41 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10030206 [exp] 159 / 1e-40 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 151 / 1e-38 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10027653 [exp] 151 / 4e-38 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157200 [exp] 526 / 2e-177 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G033100 [exp] 197 / 2e-53 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 191 / 2e-51 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 178 / 5e-47 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 178 / 7e-47 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 174 / 3e-46 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.002G178300 [exp] 172 / 7e-45 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 170 / 2e-44 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.007G003900 [exp] 155 / 4e-39 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 153 / 9e-39 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0077 [flax] [poplar] PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10007795 pacid=23143552 polypeptide=Lus10007795 locus=Lus10007795.g ID=Lus10007795.BGIv1.0 annot-version=v1.0 ATGGCTAATTACCATTTAGTAATCCCAACAATCTTAGTAATCACACTTGCCATCTTAATCTCGTCGTCGAATTCTAGCCCGCCGGAGAACCCAATCAAAT GTACATCCCACAACGCCAACTGCACGATCTCCAACTCCTATGGCAACTTCTCCGACCGCTCGATTTGTCGAGCGGCCTCCGTGGTGTATCCGTCCACACA GGCTGAACTTATCGCCATCGTGGCCAACTCGACAAGATTGAGGCAAAAAATGAAAGTAACGACTCGTTACTCACACAGCATGACGAAGCGGTTCTGCCCC GATGGCGAAGACGGGTTATTGATAAGCACCAACAACCTAAACCGGATCGTGACAATTAACAACGCTAGCAAGACAGTGACAGTCGAGAGCGGGATTCTAA CTGGGGACGTCTACGATGCGCTGGCCAGGAGCGATTTGGCATTACCCTATACGCCCTATACGCCCTATTTTCAAGGGTTGACGATCGGGGGACTCATAAG TACTCATGCACACGGGAGTACGTTCAAGCAGTGTGGGGGTTCGCCTATGGTTTTACTAACGACGGTACGCTACGAAATTCGAAATCGAGAGGTTGCCGAT CGGATACCACAACAAGCTCCAAGCAACAGGGAGCTGCTTCTTGAGCCCGAGGACAACCTGAAGACGAGCTGTTCGTGGGACCCACGAAAGGATGGCGCGT TTTTCCACCAGACGACGTTTACGATCAGCCTACCGCTGGTCGAGGCTTTCATCAGCGAGCTCCAACGCCTCGTTGATGAGAACTCTAAGGCCGTGTGCAT ATTGGACGAGCAGAATGGCATTCTCATTCGCTATCACCGCGGGTCTACCGCCTACCTCGGGAAGTCCGATGATGCGATCAGGAGCAGGGACCCGCTGGTC CTGAGGCTATGCGAGGACGGGATGGAAGAGATCGAGCAGATGGCGTTTTTCAAGTACAATGCGACCCCGCACTGGGCCAAGAACCGGGACTTGGCGTTCA TGTCGTCCTCGTCGGCGCCGGCGTGGACGAGAAGAAGTACTTACATGGCGAGAAGCCCTCTACGTAACATTCACTCCGCAGCAGGCAAAAACGGCGGCGT GCCATCGAACCACAGAGCTTCTCTAGAGCAAGATGTTGAGCTGCTTCAATTGAGGCTGCAGGAAGAGCGAGCGATGAGGTCGATGCTTGAACGAGCGATG GGTCGAGCTTCGAGCACTTTGTCCCCCGGCCACAGGCATTTCGCATCTCAGACAAAGGAGTTGATAGCTGAGATAGAGTTACTTGAGCAAGAAGTTACCA ACCGTGAGCAGCAAGTTCTGTCACTTTACAGAACCATATTTGATCACTGTGTTACTAGCAAGCCAGTCTCTGAGCAAAGCTTCAGTAATGTTGCTTCTCC TTCTCATCACCATCACTATCAACCGAAGCAATTTTCGTCGTCGAAGAATAAGAAAGAACACCATCCTCGAATCATCTCGACTGCCTTCTGCTCCTCGAAG ATGTTTCCGCTGAGATCTCTGCAGTCTCTTGCTACTGAGTCTGGAGGAAGAAGAGGAAGTAGCAGAGGAGGACCAACTAGACTACACAAGAGTTGTTTCA CGCAGATTGATCAAAAGAGTTGTACAACATCAGAAGCAAGGCCATCATCAACAATGGCGGCACAAAAGACACTGAAGGATCATCTCCGCCGCCAATGTCC AAGCAAGCTGTCGGAGGAGATGGTGAAGTGCATGGCTGCCGTTTACTGCTGGCTCTGTAGTACTAGCAGCTCCGCCGGAGAGAACCCACTAAAGAAGAAA TTAGGCAGGTCTCCTCTCTTGTCCAGGTCTTCCACCAATGTCGTGCTGCCACGTCGCTGCGGCGGAGCAGAGAATTCAGATTACTGGTCTTGCAAATCGA CGGTGGAGGTTTGTTGGATCTCCACCGATCAGAGCCGGTATTCCTCTGCTTCGTATGCCATTGACCACTACAGGGTCTTAGTGGAACAACTAGAAGCAGT AACAGTGACACAGATGGAGACCAATGCACTAATCGCATTCTGGATCAACGTCTACAATTCCCTTGTAATGCACGCCTATTTGGCTTATGGCATCCCACAA AGTTCCCTGAAGAGGCTAGCATTGTTTCACAAGGCCGCTTACAACATCGGCGGACACATCGTAAGTGCGAGCACCATCGAGCAGTCCATATTCTGCTTCC GCACCCCTCGTGTTGGGAAGTGGCTGGAGACGATCATGACCACCGCGTTGAGGAAGAAATCGAGCGAAGAAAGGCGACTCATTTCTTCCTCATTCGCCCT CCCGAGCCCTCCTCCTTCGCTCGTCTGCTTCGCCCTTTGCACCGGAGCATTCTCCGACCCCGTGTTGAGAGTATACAGTCCATCAAACGTCAAGGAAGAG CTCGAATCCGCGAAGAGGGAGTTCCTCCAGTCGAACGTCCTGGTGAAGAAGTCGAAGAAGGTCTTCCTCCCGAGACTACTGGAGCGGTTCGTGAAGGAGG AAGGAATCACGGGCTCCGACGATCTGCTCAAGTCGGTAGTGAAGAGTGTGGACAAGAAGCTTCGGGATTCGATCGAGAAGTGCTTTGTCGAGAAGAAGAA GAAGGTGTCTCATGTTGTAGAGTGGTTGCCTTATAGCTCTAAGTTTAGGTATGTGTTCTCAAAGGAGTTGACTGAAAAACCTTGGTGGGTATGA
AA sequence Show only first row Show all	>Lus10007795 pacid=23143552 polypeptide=Lus10007795 locus=Lus10007795.g ID=Lus10007795.BGIv1.0 annot-version=v1.0 MANYHLVIPTILVITLAILISSSNSSPPENPIKCTSHNANCTISNSYGNFSDRSICRAASVVYPSTQAELIAIVANSTRLRQKMKVTTRYSHSMTKRFCP DGEDGLLISTNNLNRIVTINNASKTVTVESGILTGDVYDALARSDLALPYTPYTPYFQGLTIGGLISTHAHGSTFKQCGGSPMVLLTTVRYEIRNREVAD RIPQQAPSNRELLLEPEDNLKTSCSWDPRKDGAFFHQTTFTISLPLVEAFISELQRLVDENSKAVCILDEQNGILIRYHRGSTAYLGKSDDAIRSRDPLV LRLCEDGMEEIEQMAFFKYNATPHWAKNRDLAFMSSSSAPAWTRRSTYMARSPLRNIHSAAGKNGGVPSNHRASLEQDVELLQLRLQEERAMRSMLERAM GRASSTLSPGHRHFASQTKELIAEIELLEQEVTNREQQVLSLYRTIFDHCVTSKPVSEQSFSNVASPSHHHHYQPKQFSSSKNKKEHHPRIISTAFCSSK MFPLRSLQSLATESGGRRGSSRGGPTRLHKSCFTQIDQKSCTTSEARPSSTMAAQKTLKDHLRRQCPSKLSEEMVKCMAAVYCWLCSTSSSAGENPLKKK LGRSPLLSRSSTNVVLPRRCGGAENSDYWSCKSTVEVCWISTDQSRYSSASYAIDHYRVLVEQLEAVTVTQMETNALIAFWINVYNSLVMHAYLAYGIPQ SSLKRLALFHKAAYNIGGHIVSASTIEQSIFCFRTPRVGKWLETIMTTALRKKSSEERRLISSSFALPSPPPSLVCFALCTGAFSDPVLRVYSPSNVKEE LESAKREFLQSNVLVKKSKKVFLPRLLERFVKEEGITGSDDLLKSVVKSVDKKLRDSIEKCFVEKKKKVSHVVEWLPYSSKFRYVFSKELTEKPWWV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47380			Protein of unknown function, D...		Lus10007795 [exp]	0	1
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	6.9	0.7859
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	6.9	0.8094
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	8.7	0.7812
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	12.7	0.7995
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	15.0	0.8137
AT5G47380			Protein of unknown function, D...		Lus10004732 [exp]	18.3	0.8105
AT2G46990	AUX_IAA	IAA20	indole-3-acetic acid inducible...		Lus10010081 [exp]	20.4	0.7463
AT2G37690			phosphoribosylaminoimidazole c...		Lus10005526 [exp]	21.0	0.7801
AT4G39380			unknown protein		Lus10033530 [exp]	21.4	0.7980
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023905 [exp]	24.7	0.7998

Compare expression of checked genes

Lus10007795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.