Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17350 167 / 8e-49 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 162 / 2e-46 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 147 / 6e-41 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G22810 85 / 3e-18 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 80 / 6e-17 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT5G43870 79 / 4e-16 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 61 / 3e-10 FKD1 FORKED 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004734 [exp] 362 / 4e-124 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 59 / 6e-10 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014703 [exp] 59 / 7e-10 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10041187 [exp] 55 / 4e-08 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 47 / 2e-05 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156700 [exp] 188 / 7e-57 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.003G077900 [exp] 168 / 3e-49 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.010G082400 [exp] 75 / 1e-14 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 73 / 3e-14 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.018G042000 [exp] 65 / 1e-11 AT4G32785 159 / 1e-47 unknown protein Potri.002G049200 [exp] 63 / 5e-11 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.005G213800 [exp] 57 / 4e-09 AT3G63300 388 / 7e-131 FORKED 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10007797 pacid=23143575 polypeptide=Lus10007797 locus=Lus10007797.g ID=Lus10007797.BGIv1.0 annot-version=v1.0 ATGAGTGGTGGGTTGTATTCTGATTGGAAGAAGAATAGTTCTTTGATGGAGTACCTGGAGGAAGATGAGGAACAGGATCAGAAGCAAGGCTCTCCATTGT TGATGACAGTTGTTCAGCCACAGACGCCTAAAATTGTGGGAGGCTTTCTGATTTCTACTGATGGGATTACTCTGCTGTTTTGGTTCTTGGGGGCATTTTA TCAGTCAGGTGGTGTGCAAAGCACAACAACGCATTCCAAGAGAACAGGAACAATAGGGAAATGGTTCAATTACCATAACAACAAGGAGACGATTAGCGGC AATACGGTGAAGAAGAAAGACAAGGCGAGAGTTGAGAACGCTCACATACACTCCACCGTCTCGATCGCCGGCCTCGCCGCAGCTTTGGCCGCCGTCGCCG CCGCTTCTCCCGGTGGTGGAGGAAATGGAAATTCCACCTCCAAAATGAGCACGGCTCTGGCATCTGCCACAGAGCTCATGGCATCCTACTGCGTCGAGCT AGCTGAATCTTCAGGAGCCGATCGCGACCGTGTTTCCGCCGTCGTTAAATCTGCCGTCGATATTCGGAGTCCCGGCGATCTTGTTACCCTTACTGCTGCA GCTGCCACAGCATTGAGAGCAGAAGCGGCACTAAAATCGAGATTGCCGAAGGAACCAAAAAAGAACGCGACGATTAGCCCTTGCGATCGAGCAATGTCAG ATGTCGACTCAAATTCTGACTCGGTTTGCCACTTAGAACAACAACAACAACAACAAGGTCCAACGTGGGATGGAGAGCTATTGCAACACACTAGAAAAGG AGCGTTGAGATGGAAAAAAGTCTCTGTTCACATCAACAAGAAATCTCAAGAATCGTGTACGGAGTGTGCGATGAGACGACGGCGTGGCCGTACAGAAAGG AGAGGGAAGAGAGCTCCGAAGAAGTCTACTTCGGAGTGA
AA sequence Show only first row Show all	>Lus10007797 pacid=23143575 polypeptide=Lus10007797 locus=Lus10007797.g ID=Lus10007797.BGIv1.0 annot-version=v1.0 MSGGLYSDWKKNSSLMEYLEEDEEQDQKQGSPLLMTVVQPQTPKIVGGFLISTDGITLLFWFLGAFYQSGGVQSTTTHSKRTGTIGKWFNYHNNKETISG NTVKKKDKARVENAHIHSTVSIAGLAAALAAVAAASPGGGGNGNSTSKMSTALASATELMASYCVELAESSGADRDRVSAVVKSAVDIRSPGDLVTLTAA AATALRAEAALKSRLPKEPKKNATISPCDRAMSDVDSNSDSVCHLEQQQQQQGPTWDGELLQHTRKGALRWKKVSVHINKKSQESCTECAMRRRRGRTER RGKRAPKKSTSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	4.4	0.8390
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	5.3	0.8214
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10011525 [exp]	7.2	0.7220
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	10.0	0.8129
AT4G17350			Plant protein of unknown funct...		Lus10004734 [exp]	10.4	0.6772
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	10.5	0.8131
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	14.5	0.7908
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	14.7	0.7523
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	14.7	0.7131
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	21.8	0.7472

Compare expression of checked genes

Lus10007797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.