Plant FIBer expression Database

Lus10007798 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57460 818 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007487
[exp]
944 / 0 AT5G57460 885 / 0.0 unknown protein
Lus10004736
[exp]
628 / 0 AT5G57460 538 / 0.0 unknown protein
Lus10028963
[exp]
446 / 9e-152 AT5G57460 517 / 5e-180 unknown protein
Lus10000167
[exp]
413 / 5e-142 AT5G57460 358 / 3e-121 unknown protein
Lus10004737
[exp]
224 / 2e-70 AT5G57460 182 / 2e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G168200
[exp]
901 / 0 AT5G57460 860 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10007798 pacid=23143584 polypeptide=Lus10007798 locus=Lus10007798.g ID=Lus10007798.BGIv1.0 annot-version=v1.0
ATGTCTTGCCTTGCTCTCTCCCTCCAACCGGCAAACGGATCCGACATCCTGATCCAGACTCGCGAATGGTTCCCGCCTGCCCGCGCCCTAGTCGCCACCT
CCGCCTTCCGGCAGACTCGATTGGCCTTCGCCGCAGCCAAGCACCCGGCGAAGAATCGCAACCGAGCATCCTCCTCCGATGACGACGACTATTCCCCTTC
CGTTTCGTCCGATTCCCTCTCCTCATTGGGAGACGACCCGCTCGCCGCCTCTAGCGGCCAGTTGATAGTCGGCGTCGAGAGCCAGTACCGCGTGGTGTAC
CGCCTCGTGAACGGGATCTACGTCCTCGGAATCACGATCGCCGACCACGACAACTCCGTCAACGTCTTCGAGTGCATCCACATCGTGAACCAGGCCGTCA
GCGTCATCGTCGCCGCGTGCCGAGGCGTCGATGTCACGCCGGAGAAGCTGAGCAGAAAATACGCCGAGATCTACATGGCTCTCGACATCGTCCTCCGCGG
AGTCAGCAGCATCCGCCTCGCAGCCATGCTCGCTTCAATGCACGGTGAGAGCATCGCAAAAATGGTCCACTCAGCTGTCGACACCGAAAGCAAGATCCGC
GGCGGAGAGACCTGGTCGGCGGTGGAAGGCCACGCGATCGAGCACGAAGGTAGCGTGGAAGCCTTTTCCAACGCCATCTTCGAGATGCCTCCAGAAACTC
TCGCAGCGGGAGATGACGTGGCGGCGAGTCTCGTCGCAGCTACCGTAGGAGAACAGCTGGAGAAGAAGGACGAGAATGAAGAAAAAGAGAAAGAGGAAGT
TAAGGATCCCTTTGCAGCTAGTGAAGCTGTAAACAAACAGGAAGATCTAGCTGGTGAATTCAAGAAGGATAAGAGTCAAGCTAGTGATTTGACATTAGCA
TTAGCAGGGCTTGAAGTAACTACATTGCCTCCCGCTGAAGCTACACAAGCTACTCACATCAATGTCGAAGGATTCGAAGGGGATTACGGCGGGATTGAAT
TCAGCAACGAACAAGCTTCTTTAGGAGAAACCTTTGAAGGATTCGGCGAAGCTTGGGGTGGTGGATTGGATGCTTCTGAGTTCGTTGGACCTAAGAAGGT
CCCCAAGCAGCAAGGACTCGGCCTTGGCGGACTCGAATTGCTTCAAACGGGTGCGGATCCTGCAGCTGCTGCCAAGGCGGCTGCAGGAGGTACTCCTCTT
GAGAATCTATTGGTACAGAAACCCGAAATGAAGGGTCCAGAAATGTACATAGAAGAAGAAATCAGTGCAGAGTTCAGAGAGTCTCTGCTTGCTAGAGTTG
GATTGATGGGTGTGGTTTACTTGAGAACACTGCCAACCAAAACTGCTGGCGATAAAGAAACTGAATTCTCATTCCGGGTCGACAACACAAAACCAGTCAA
GAGGTTCATTATGCATAGCTCGAAAGTAAGCAGCCTTGGTAACGGAATGTTTCATGTTAGAACTACTGCTTCAGATGAACCTATACCGATACTAAAGTAC
AGTCTTTTGCCTAAGTCGACTCCGTTACCTTTAAGGGTTCGTCTAGTTCAGCGTCATAGCGGAACCCTCTTCTCGGTAATGATCCAGTACGCGTCGAATC
CGGATTTGGTAGTTCCTTTAAAGGATGTGACTTTCACCTTGAAGTTGCCAGTCGATCCTACGTTGCTGAATGTTTCGCCCAAGGCAGCACTGAATAGGTC
TCAGAAAGAGTTGAAATGGGTTTTACCAGAGATTCCTGTCAAAGGAGCTCCTGGGAAGTTGAGGGTGAGAATGCCTGTTGACTCCGTTGAAGGAGAAGGT
GAGGAAGAAGAGATAGAGGCTGTTTGTTATGTGAAATTCTCCATGGAAGATTCTACCTCGCTGTCGGAGATTTGTTTGCGGCCTGCCTCGGAAGGGGCAA
CCGACTTCTACGAGGTTAATCACAGGTACCAGAGTGGAGTTTATTTGTGCAATTGA
AA sequence
>Lus10007798 pacid=23143584 polypeptide=Lus10007798 locus=Lus10007798.g ID=Lus10007798.BGIv1.0 annot-version=v1.0
MSCLALSLQPANGSDILIQTREWFPPARALVATSAFRQTRLAFAAAKHPAKNRNRASSSDDDDYSPSVSSDSLSSLGDDPLAASSGQLIVGVESQYRVVY
RLVNGIYVLGITIADHDNSVNVFECIHIVNQAVSVIVAACRGVDVTPEKLSRKYAEIYMALDIVLRGVSSIRLAAMLASMHGESIAKMVHSAVDTESKIR
GGETWSAVEGHAIEHEGSVEAFSNAIFEMPPETLAAGDDVAASLVAATVGEQLEKKDENEEKEKEEVKDPFAASEAVNKQEDLAGEFKKDKSQASDLTLA
LAGLEVTTLPPAEATQATHINVEGFEGDYGGIEFSNEQASLGETFEGFGEAWGGGLDASEFVGPKKVPKQQGLGLGGLELLQTGADPAAAAKAAAGGTPL
ENLLVQKPEMKGPEMYIEEEISAEFRESLLARVGLMGVVYLRTLPTKTAGDKETEFSFRVDNTKPVKRFIMHSSKVSSLGNGMFHVRTTASDEPIPILKY
SLLPKSTPLPLRVRLVQRHSGTLFSVMIQYASNPDLVVPLKDVTFTLKLPVDPTLLNVSPKAALNRSQKELKWVLPEIPVKGAPGKLRVRMPVDSVEGEG
EEEEIEAVCYVKFSMEDSTSLSEICLRPASEGATDFYEVNHRYQSGVYLCN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57460 unknown protein Lus10007798
[exp]
0 1
AT1G79920 AtHsp70-15 heat shock protein 70-15, Heat... Lus10011463
[exp]
2.2 0.9094
AT5G19130 GPI transamidase component fam... Lus10032125
[exp]
3.2 0.8973
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Lus10024407
[exp]
4.9 0.8885
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Lus10025336
[exp]
5.3 0.8882
AT4G01400 unknown protein Lus10002677
[exp]
10.0 0.8796
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Lus10025354
[exp]
10.6 0.8682
AT2G04620 Cation efflux family protein (... Lus10013358
[exp]
11.0 0.8575
AT5G41950 Tetratricopeptide repeat (TPR)... Lus10025650
[exp]
12.3 0.8409
Lus10011573
[exp]
12.7 0.8358
AT4G01400 unknown protein Lus10030195
[exp]
12.7 0.8790

Lus10007798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.