Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47420 446 / 7e-160 Tryptophan RNA-binding attenuator protein-like (.1) AT4G17420 446 / 9e-160 Tryptophan RNA-binding attenuator protein-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004739 [exp] 548 / 0 AT4G17420 427 / 6e-151 Tryptophan RNA-binding attenuator protein-like (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078900 [exp] 497 / 3e-180 AT5G47420 437 / 1e-156 Tryptophan RNA-binding attenuator protein-like (.1) Potri.001G155900 [exp] 493 / 2e-178 AT5G47420 444 / 2e-159 Tryptophan RNA-binding attenuator protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF01987 [flax] [poplar] AIM24 Mitochondrial biogenesis AIM24
Representative CDS sequence Show only first row Show all	>Lus10007800 pacid=23143587 polypeptide=Lus10007800 locus=Lus10007800.g ID=Lus10007800.BGIv1.0 annot-version=v1.0 ATGGCTGCGCCATTCTTCTCTACTCCGTTTCAGCCTTACGTGTATCAGAGTCAACAGGCTGCTATGATACCGTTCCAGATTTTGGGTGGTGAAGCTCAGG TGGTTCAGATAATGTTGAAACCAAACGAGAAGGTTATTGTACGACCAGGTTCAATGTGCTTCATGTCTGGCTCTGTAGAAATGGAGAACGTCTTCATTCC TGAAAATGAAGTAGGGATGTGGCACTGGCTTTTTGGCAAGACTATTACCAGTGTAGTGATTCGTAATAACGGTCCAGGCGACGGATTTGTTGGAATCGCT GCACCTTCACTTGCGAGAATTCTCCCGATTGATTTGGCTATGTTTGGCGGAGAGATTTTGTGTCAGCCAGATGCATTCCTTTGCTCCATCAACGATGTAA ATGTGAATAACGCATTCGATCCGAGGGCACGGAATATTATGGCTAGCGCAGAGGGATTCTTGAGGCAAAAGCTAACAGGACAAGGGCTGGCATTCATCGT GGCTGGGGGATCTATTGTACAGAAGAAGCTCGACGTGGGAGAGGTACTAACAGTCGATGTTTCCTGTATCGCTGCCCTTAATTCCACCGTCAATGTCCAA ATCAAGTACAACGGCCCCCTGAGAAGAGCTGTCTTCGGTGGTGACAACCTGGTAACAGCAACTCTAACCGGTCCGGGCATCGTGTTCATCCAGAGCTTGC CCTTCCAACGATTCTCCCAGCGAATCGCAAGGGCAGTGACCTCCCCGAACATGAGGGAGAACCCGAAGTTCTTTGTCCAGATAGCACTCTTCTTCTTCCT GGCGTACGTTGTTATCGTATCGTCTTTGATCTTGACTGATGTGTGA
AA sequence Show only first row Show all	>Lus10007800 pacid=23143587 polypeptide=Lus10007800 locus=Lus10007800.g ID=Lus10007800.BGIv1.0 annot-version=v1.0 MAAPFFSTPFQPYVYQSQQAAMIPFQILGGEAQVVQIMLKPNEKVIVRPGSMCFMSGSVEMENVFIPENEVGMWHWLFGKTITSVVIRNNGPGDGFVGIA APSLARILPIDLAMFGGEILCQPDAFLCSINDVNVNNAFDPRARNIMASAEGFLRQKLTGQGLAFIVAGGSIVQKKLDVGEVLTVDVSCIAALNSTVNVQ IKYNGPLRRAVFGGDNLVTATLTGPGIVFIQSLPFQRFSQRIARAVTSPNMRENPKFFVQIALFFFLAYVVIVSSLILTDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	0	1
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	5.3	0.7261
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	10.4	0.7756
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	11.0	0.7098
AT3G48490			unknown protein		Lus10014788 [exp]	11.7	0.6822
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	12.2	0.7661
AT1G22520			Domain of unknown function (DU...		Lus10001541 [exp]	17.9	0.6423
AT2G41150			unknown protein		Lus10022403 [exp]	24.2	0.7507
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	24.6	0.7432
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	25.8	0.6934
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	25.9	0.7293

Compare expression of checked genes

Lus10007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.