Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47400 778 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004740 [exp] 1436 / 0 AT5G47400 829 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155800 [exp] 907 / 0 AT5G47400 777 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007801 pacid=23143569 polypeptide=Lus10007801 locus=Lus10007801.g ID=Lus10007801.BGIv1.0 annot-version=v1.0 ATGCAACCTTACTCCTACACCGTCAATTCCCTCTCCAAGTCACAGGACATCGCCGCCGCAATCCTCGCCTCCTCAACTCCTCCGCAGATCTCGGCCGCAT GTAGCTCCGTCGAGTCATTCCTCCGCTCCCACACTCCGGATCAGTCGCGCCACTTCTACTCCGTCGCATTCCCGACCTTAATCTGCAAGCTCTACGGATT CGACGACGCCTCCGGCGGAGGCGGCGGAGGCTGGGTCGACGTAGTCCTCAGCTCGAACGACTCCGATCTCGCCTCTAGAGTTTTCGACCTCCTCTCCCCT GCCGGTGTCCTGTTTCAGTCGATTTCGGCTGTTGATGGTCAGTCGCTTGTGAAGTACGTTTTCCCTGTCGAGCGGTTGCCTGATTGGACGCGGATTGTTG TCTCTAGCGATAAGGATTGTCAAGCGCTCAGTACTGTTTGTCCTGTTTTCCAAGGTAAAGTGAAGGAAGGATTGAATAAGGGAACGTCCTCTTCTTCTTC GTCTTGTTATCAGATTCAGCTGAATGTTTTCGAGTATTTTGTGTATTGGTTCGCTTACTACCCGACTTGCAAGGCCAATAGTGAGAATTCTGGTAGTATG ACAGTGGCCAATGCGAAGAGTAAGAAGGTGTCGAAGTTGGAGAACTGGACTTCTTCGATATCTAGGATGTCGCATTCTAAGCGAGGGAACGAGCAGAAGC TGGAATGTGATCTTTATGTTAGACTTCTGTATGCTTATTTGCGTGCGTTTGTGCCTGTTCGTGACTTGGATATACACCAGCCTTATCGCAGCTCACTCTT GCATTATGGCTATGGAAACGATGGAGCTACGATGGTGAGGGCTGAGTTTTTCGTTGATGCATTGGTGCACTACTGGCTTGTTGATAATGATTTTTCGCCA CTGCCTGTGAATCTTTGCAAGTCTGTTGGATTATCTTTGTCGCTGAGGTCAGTGTTTGACGAGATTCCTCCGTCGTCTAGTGTGGGTGAGGTAGTTAAGT TGTTGGTTAAGTACTTGAATTGGAGTGGAGGAACGACTGAAGAAAGCATCAGACGTGTCGAAAGTCCCAATAGGGGAATGCTTTCTCCTAGTTCCTTTGA TATGAAGTCTTCTCAGGTGGTGGAGTCTTGGAATGCTTGGATTCGGAGACCGTTGTATAGGTTCATTTTGAGGACGTTTTTATTCTGTCCAATGGGGACA TCGATGAAGAATGCGTCTCAGGTGTTCTCCATCTGGGTTGCTTACATGGAACCGTGGAAGATTGGAAAGGATGATTTTGTGGAGCTTGATGCCATTGTTG GTGGTTCAGTCAGAAACAATAATGGAGAAGATGGGAAAAGCAGAAATTTTGATATTGCTTTGTGGGAAGGCTATGTGATGTCCAACTACTTGTACTACAG CTCATTGGTTATGCATTTTATCGGATTTGCTCACAAGTTTCTTCACACAGATCCTGAAATGATTGTCGAGATGGTCTTGAAGGTCATTACTGTACTGACC TCAAACAAGGAGTTGTTGAATCTTGTAAAGAATGCTGATAGGGTTTTCCATGCCAAGCAATCAGGGTCTGGGAAAGCCATGCTGAATCACCTGTACAAAT ATGTTCCCCTGATCAATGAACAACTTCAGGATTGGGAGGACGGTTTGTGTGAAAGTGATGCTGATGGATCATACTTGCACGATAATTGGAACAAAGACCT AAGACTTTTTAGCGATGCTGAAGACGGTGGACAACAATTGCTTCAGTTGTTTTTGTTACGAGCAGAATCCGAGTTGCAAGCCAATTCCGGCAGCAATCTT CCACAAAGCTTGGAGCTTATAGATTCACTAAAGAAGCAAGTTGGGTACTTGTATGGCGCCTACCCTGTGAGATCTCTCTCCTTCACATCAGAAAAGAAGC AGCAGCAGTGTGAGCAGATCCGAGACGAGATATTCACACCCCGAAAATTAGGCAACAAGACCTTCTACGATGCCACCAAGTACAAAGGCGACTCGATGAA GCGTCCCATCTCAGCTGACGAGGTTGCATGGCTAGCGAAATGGCTCGTGTTCTTGTCTTGTTGGCTGAACGAGACCCTGGGGCTGAATCGATCAGAAAAC AGCGATGCCATTGCCAACACTAAATGGTCATACCTCGAGGTTTCCGGCAATGAAGCGAACGTCGATGGACCTGCCGAAACCTTGAAGACTGTTTCGCATG CTGTCTACTCGTGGCTCCTGTTTTTCGGCGCTTTTGTTGGCGGATGGATGAGAAAGCATGACCTGCGGGTGAATCTCAGGCTTTTCGCTTCAAAGAAGGT CATTACTGTCTTGCTCTTGTCAGCTCTTTTCAGTATGTTGAAGAAAGCTGCTAGAATTTCAGTGAAGTTAGTTCTAAGATAG
AA sequence Show only first row Show all	>Lus10007801 pacid=23143569 polypeptide=Lus10007801 locus=Lus10007801.g ID=Lus10007801.BGIv1.0 annot-version=v1.0 MQPYSYTVNSLSKSQDIAAAILASSTPPQISAACSSVESFLRSHTPDQSRHFYSVAFPTLICKLYGFDDASGGGGGGWVDVVLSSNDSDLASRVFDLLSP AGVLFQSISAVDGQSLVKYVFPVERLPDWTRIVVSSDKDCQALSTVCPVFQGKVKEGLNKGTSSSSSSCYQIQLNVFEYFVYWFAYYPTCKANSENSGSM TVANAKSKKVSKLENWTSSISRMSHSKRGNEQKLECDLYVRLLYAYLRAFVPVRDLDIHQPYRSSLLHYGYGNDGATMVRAEFFVDALVHYWLVDNDFSP LPVNLCKSVGLSLSLRSVFDEIPPSSSVGEVVKLLVKYLNWSGGTTEESIRRVESPNRGMLSPSSFDMKSSQVVESWNAWIRRPLYRFILRTFLFCPMGT SMKNASQVFSIWVAYMEPWKIGKDDFVELDAIVGGSVRNNNGEDGKSRNFDIALWEGYVMSNYLYYSSLVMHFIGFAHKFLHTDPEMIVEMVLKVITVLT SNKELLNLVKNADRVFHAKQSGSGKAMLNHLYKYVPLINEQLQDWEDGLCESDADGSYLHDNWNKDLRLFSDAEDGGQQLLQLFLLRAESELQANSGSNL PQSLELIDSLKKQVGYLYGAYPVRSLSFTSEKKQQQCEQIRDEIFTPRKLGNKTFYDATKYKGDSMKRPISADEVAWLAKWLVFLSCWLNETLGLNRSEN SDAIANTKWSYLEVSGNEANVDGPAETLKTVSHAVYSWLLFFGAFVGGWMRKHDLRVNLRLFASKKVITVLLLSALFSMLKKAARISVKLVLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47400			unknown protein		Lus10007801 [exp]	0	1
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	2.0	0.8863
AT5G47400			unknown protein		Lus10004740 [exp]	2.2	0.8784
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	2.6	0.9041
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	10.6	0.8976
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	10.8	0.8941
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	14.9	0.8136
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	15.7	0.8601
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	16.5	0.8774
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	17.3	0.8666
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	20.0	0.8547

Compare expression of checked genes

Lus10007801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.