Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004741 [exp] 54 / 4e-08 AT5G47430 648 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007802 pacid=23143555 polypeptide=Lus10007802 locus=Lus10007802.g ID=Lus10007802.BGIv1.0 annot-version=v1.0 ATGAATGTGCTTCAACTATTCAGCATAGCAACACCTATCCAGAACACAGTTTCACCATGCATACTGCCAAGCTCTTGCGAGCTCCAGACAATAACGAAGC ATGGCTTGACAATCTCAACAAATTCAAAGGTTAATTTAACTAAGTTTGATCGACAAAAGCAACCAACCTTCATTAGTTTGGGCATTAGTCACCACCAGAT CGAAGTCTGTACCCCTGCCCAGATAGATTTCAAACCAAACCGACTACTCAGTCAGCTCCCTGATCCTGATCCTTCTCAGCCTGCTTCTGTATCTAGGTTC GGTCAGAACCTCCCAAAAAACGATTCCACGATCGCCTCCTTCACACCAGAATCTTCAGGCTCGCCAATCGTTGCAGCTGCTGTGCGATTTAACAGCCAGA ATAAGCTTATCTTCAACGAGAATCCGAAGCAAGCAATCTCATCCCCCGTTCAAGAGGATAGAAGCGATTTCATCCCTCCCATCCACGGAACGCCGATTGG AGCGCAGATCAAGGTGAAGACACACCACCGAATCCGTCACGAACTCATCACCCGCCGACGTGAGAAGCCGTTGAGTCTTCAATCGAATCGCAAGCGATTC CGAGCCTCCCGATGCCTTGAAGGAGCTTCTTCTTCTTCTATAGGGGGGTATTCCAGCAGCTGGGAGAGAGTGTGA
AA sequence Show only first row Show all	>Lus10007802 pacid=23143555 polypeptide=Lus10007802 locus=Lus10007802.g ID=Lus10007802.BGIv1.0 annot-version=v1.0 MNVLQLFSIATPIQNTVSPCILPSSCELQTITKHGLTISTNSKVNLTKFDRQKQPTFISLGISHHQIEVCTPAQIDFKPNRLLSQLPDPDPSQPASVSRF GQNLPKNDSTIASFTPESSGSPIVAAAVRFNSQNKLIFNENPKQAISSPVQEDRSDFIPPIHGTPIGAQIKVKTHHRIRHELITRRREKPLSLQSNRKRF RASRCLEGASSSSIGGYSSSWERV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007802 [exp]	0	1
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	1.0	0.9630
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	1.4	0.9519
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	2.4	0.9382
					Lus10023010 [exp]	2.6	0.9301
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	4.0	0.9300
AT1G49170			Protein of unknown function (D...		Lus10042819 [exp]	5.3	0.8783
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	5.5	0.9088
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	5.8	0.9064
					Lus10004778 [exp]	5.9	0.9334
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	6.0	0.9332

Compare expression of checked genes

Lus10007802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.