Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47430 376 / 6e-121 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT4G17410 362 / 1e-115 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT2G32950 51 / 2e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004741 [exp] 722 / 0 AT5G47430 648 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10034393 [exp] 122 / 4e-30 AT5G47430 186 / 4e-52 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10029205 [exp] 118 / 1e-28 AT5G47430 175 / 2e-48 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10021702 [exp] 114 / 1e-27 AT4G17410 140 / 1e-36 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10029990 [exp] 54 / 4e-07 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 52 / 1e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078800 [exp] 515 / 3e-174 AT5G47430 635 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.001G156000 [exp] 485 / 1e-162 AT5G47430 620 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.013G112200 [exp] 246 / 2e-75 AT5G47430 260 / 1e-78 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.004G002700 [exp] 50 / 3e-06 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 49 / 6e-06 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007803 pacid=23143564 polypeptide=Lus10007803 locus=Lus10007803.g ID=Lus10007803.BGIv1.0 annot-version=v1.0 ATGGTGGACAATGCCCCTCAAGAGCAAAGTGGCTTTGCAGGTGCTGATTCATCTGCTTCAAAATACAATGAAGATACCGAGTGGGATGAGTTTGGTACTG ACTTATATGCCATCCCTGAAGTTGCACCTGTAATATCAAGCAATCCGCCTCCTGAGGCTCCGCCTGCTAGCAAAGCTGACGAGGACAGCAAAATTAAAGC TTTGATTGATACTCCGGCTTTGGATTGGCAGCGTCAAGGTGCCGATGGCTTTAGCATGGGTAGAGGTTTTGGCCGGGGAATGGGTGGTCGAATGGGTGGA CGTGGCTTTGGTGGGATGGGTATGGAGAGGAAAAATCCTCCACAGGGTTATGTGTGCCACAGGTGTAAGGTACCAGGACATTATATTCAGCACTGCCCTA CCAATGGTGATCCAAATTACGATATCAAGAGAGTGAAACCTCCTACCGGGATCCCGAAGTCGATGTTAATGCAAACACCAGATGGTTCATATGCATTGCC TAGCGGCGCAGTCGCTGTTTTAAGGCCAAATGAGGCTGCTTTTGAGAAAGAAATTGAAGGGTTGCCTACATCAACGTCAAGACCTGTTGGCGATCTTCCG CCAGAACTGCATTGTCCTTTGTGCAAAGAAGTTATGAAAGATGCTTCACTCACAAGCAAGTGCTGTTTCAATAGCTTTTGTGACAAATGTATTAGGGAGT ACATTATCTCGAAATCTCGGTGTGTATGTGGTGCGACAAGTGTCCTTGCTGATGACCTCCTTCCAAACAAGACACTTAGGGATACCATCAATCGTATCTT AGAGTCTGGCAACAGTAGTGCAGATAATGCTGGCAGCACCTTCCAAGTTCAAGATATGGAGTCTGCACGTTATCCGCAACAACCCAAGTTTCCTTCTCCC ACGCAGTCGGCTGCATCAAAAGAGGAGCCTAGATTACCTCCCACTGTTGAAGAATCTTCTAAGCCGAAGGTTAACCCTCCCATCGTTGAGGACAAACATG TTCCGATCCAACAACCAGCTGTTGAGAAGCCAATTACTTCTGAAGTGCCTGATGTCTCGGAAGCTACCCACGAGTCGATGAGTATGAAGGAGCCGGCATC ACAAGGCAGCGCTCCACTCATGGATGAAGAAGTGCAGCAGAAGCTTGCTCAGGCTGATGCAGCAAAGAAGAAGAAAAAGAAGAAAGTCCGCGTGCCTCCA AATGATAGTAGTAACCACTTCAAACAATGCTGTATAGCAGATATGTGGAAAGGCCCTCAAGATCTTGCGGCCGAGAATTTCATGATGCCTATGAGTATGC CCCCTGCTCCTTACAACCCTTACATGATGCCCGGGATGCAACCCGGGATGGACCCATTTATGAGTGGTCCGTTCGGCGGTCCAATGCCACCTTTTATGGG TTACGGTATGGGGCCACTTGACATGCTACCTTTCGGAGGTATGATGCCACCAGATCCTTTCGGTGGGCAAGGGTATATGATGCCGCCGATGATGCCACCC CCAAGGGATCTAGCGGAATTGGGAATGGGCATTAATGGTGGCCCTCCAGCAATGAGCAGGGACCAGTTTGAGGCGTGGAAGGCTGAGATGAGGAGGCGGC GCGAAAATGATAGACGAGCTGAAAGCCATAGGGAGTTTCCGAGGGATCGCGAGTTCGGAAGAGAGGTCAGCAGCAGCGGGACAAACGGCGGTGGTCCGCC GATGAAATCTATAGTAAATTAA
AA sequence Show only first row Show all	>Lus10007803 pacid=23143564 polypeptide=Lus10007803 locus=Lus10007803.g ID=Lus10007803.BGIv1.0 annot-version=v1.0 MVDNAPQEQSGFAGADSSASKYNEDTEWDEFGTDLYAIPEVAPVISSNPPPEAPPASKADEDSKIKALIDTPALDWQRQGADGFSMGRGFGRGMGGRMGG RGFGGMGMERKNPPQGYVCHRCKVPGHYIQHCPTNGDPNYDIKRVKPPTGIPKSMLMQTPDGSYALPSGAVAVLRPNEAAFEKEIEGLPTSTSRPVGDLP PELHCPLCKEVMKDASLTSKCCFNSFCDKCIREYIISKSRCVCGATSVLADDLLPNKTLRDTINRILESGNSSADNAGSTFQVQDMESARYPQQPKFPSP TQSAASKEEPRLPPTVEESSKPKVNPPIVEDKHVPIQQPAVEKPITSEVPDVSEATHESMSMKEPASQGSAPLMDEEVQQKLAQADAAKKKKKKKVRVPP NDSSNHFKQCCIADMWKGPQDLAAENFMMPMSMPPAPYNPYMMPGMQPGMDPFMSGPFGGPMPPFMGYGMGPLDMLPFGGMMPPDPFGGQGYMMPPMMPP PRDLAELGMGINGGPPAMSRDQFEAWKAEMRRRRENDRRAESHREFPRDREFGREVSSSGTNGGGPPMKSIVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	0	1
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	1.0	0.9424
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	1.4	0.9038
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	2.8	0.8839
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10004741 [exp]	3.2	0.8771
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	9.5	0.8710
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	13.6	0.8667
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	14.1	0.8638
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	15.5	0.8295
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	16.2	0.8561
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	16.7	0.8352

Compare expression of checked genes

Lus10007803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.