Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43090 205 / 8e-68 Aconitase/3-isopropylmalate dehydratase protein (.1.2) AT3G58990 173 / 3e-55 IPMI1 isopropylmalate isomerase 1 (.1) AT2G43100 161 / 1e-50 ATLEUD1, IPMI2 isopropylmalate isomerase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028964 [exp] 214 / 4e-71 AT2G43090 309 / 1e-106 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10007488 [exp] 211 / 6e-70 AT2G43090 312 / 5e-108 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10004742 [exp] 124 / 6e-36 AT2G43100 155 / 6e-72 isopropylmalate isomerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107800 [exp] 207 / 1e-68 AT2G43090 291 / 1e-99 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007804 pacid=23143591 polypeptide=Lus10007804 locus=Lus10007804.g ID=Lus10007804.BGIv1.0 annot-version=v1.0 ATGTGCTACGTAGTCGGCGACAACATCGACACCGACCAGATCATCCCGGCCGAGTACCTAACCTTAGTCCCATCCAACCCGGACGAGTACGAAAAACTCG TCTCCCCCGCGTCCTACGAAACTCGATTCGTCGATCCAGACCAGACGAAGACGAAATACTCGATCGTGATCGCGGGAGAGAACTTCGGATGCGGATCTTC CCGCGAGCACGCGCCGCGGGCGCTGGTCTGTGAGGAGTGTAGTACTGGTGATGTGTTGACGATCGAGCTTGCTGAGAGTAAGTTGATCAATCATACTACT GGGAAGGAGTACGTGTTGCAGCCGATTGGTGATGCTGGGCCGGTGATTGAGGCCGGAGGGATTTTTGCCTACGCTAGGAAGACTGGGATGATTCCTTCCA GCTCTGGTTAG
AA sequence Show only first row Show all	>Lus10007804 pacid=23143591 polypeptide=Lus10007804 locus=Lus10007804.g ID=Lus10007804.BGIv1.0 annot-version=v1.0 MCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLVSPASYETRFVDPDQTKTKYSIVIAGENFGCGSSREHAPRALVCEECSTGDVLTIELAESKLINHTT GKEYVLQPIGDAGPVIEAGGIFAYARKTGMIPSSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	2.0	0.9064
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	6.3	0.8936
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	6.7	0.8888
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	6.7	0.8765
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	6.7	0.8954
AT4G32020			unknown protein		Lus10005344 [exp]	7.1	0.8982
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	7.7	0.8908
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	8.5	0.8821
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	8.9	0.8910
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	9.8	0.8904

Compare expression of checked genes

Lus10007804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.