Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 329 / 3e-116 Ribosomal protein L23/L15e family protein (.1) AT4G17390 328 / 7e-116 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004743 [exp] 367 / 2e-131 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10000165 [exp] 366 / 3e-130 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10028965 [exp] 366 / 4e-130 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1) Lus10009653 [exp] 359 / 3e-128 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10009017 [exp] 352 / 4e-125 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106800 [exp] 348 / 6e-124 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 348 / 6e-124 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 347 / 2e-123 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1) Potri.002G141500 [exp] 343 / 4e-122 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 343 / 4e-122 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF00827 [flax] [poplar] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Lus10007805 pacid=23143614 polypeptide=Lus10007805 locus=Lus10007805.g ID=Lus10007805.BGIv1.0 annot-version=v1.0 ATGGGTGCCTACAAGTATGTTTCCGAGCTATGGAGGAAGAAGCAGTCCGATGTCATGCGGTTCATCCAGAGGGTGAGGTGTTGGGAGTATCGCCAGCACC CGTCGATCGTTCGGGTCACTCATCCTACCCGCCCCGACAAGGCTAGGCGTTTGGGGTATAAGGCCAAGCAGGGATACGTGGTCTACCGTGTCCGTGTCAG ACGTGGTGGAAGGAAGAGGCCAGTGCCCAAGGGTATCGTCTACGGTAAACCCACCAACCAGGGAGTTACTCAGCTGAAGTTCCAGAGGAGCAAGAGGTCT GTTGCTGAAGAGCGTGCCGGAAGGAAGCTGGCCGGTCTCAGAGTACTCAATTCCTACTGGGTGAATGAGGACTCGACCTACAAGTACTTTGAGGTGATCC TTGTTGACGTGGCGCACAACGCCATCCGCAATGACCCGAGAATCAACTGGCTCTGCAACCCTGTCCACAAGCACAGAGAGCTCCGCGGTCTCACCTCTGC CGGAAAGAAGTACAGAGGGCTCCGCGGAAAGGGTTCCAGGTACCACAAGAACAAGCCATCTCGCCGTGGAACATGGAAGAGGAACAACACCCTCTCCCTC CGCAGATACCGTTAG
AA sequence Show only first row Show all	>Lus10007805 pacid=23143614 polypeptide=Lus10007805 locus=Lus10007805.g ID=Lus10007805.BGIv1.0 annot-version=v1.0 MGAYKYVSELWRKKQSDVMRFIQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLAGLRVLNSYWVNEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGSRYHKNKPSRRGTWKRNNTLSL RRYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	0	1
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	1.0	0.9840
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	1.7	0.9789
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	2.4	0.9750
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	2.8	0.9792
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	4.0	0.9773
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	4.5	0.9766
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	4.6	0.9736
AT4G39200			Ribosomal protein S25 family p...		Lus10040436 [exp]	4.9	0.9660
AT1G48830			Ribosomal protein S7e family p...		Lus10034909 [exp]	5.1	0.9654
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	5.7	0.9709

Compare expression of checked genes

Lus10007805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.